| Nov 20, 2022 |
PA0721
|
Pseudomonas aeruginosa
PAO1 |
New gene name: pfsE. New product name: Pf superinfection exclusion, PfsE. New product name confidence: Class 1. New comment: PfsE transiently inhibits type IV pili (T4P) assembly through an interaction with the T4P platform protein PilC;PfsE suppresses twitching motility and protects P. aeruginosa from Pf4 superinfection. New PMID: 35038902.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA3547
|
Pseudomonas aeruginosa
PAO1 |
New comment: AlgL is required for cell viability and maintaining membrane integrity during alginate production;AlgL prevents accumulation of alginate within the periplasmic space. New PMID: 34990713.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA0666
|
Pseudomonas aeruginosa
PAO1 |
New gene name: anmK. New product name: 1,6-Anhydro-N-acetylmuramic acid kinase, AnmK. New product name confidence: Class 1. New PMID: 21288904.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA3800
|
Pseudomonas aeruginosa
PAO1 |
New gene name: bamB. New product name: BamB, component of beta-Barrel Assembly Machine. New product name confidence: Class 1. New PMID: 23189157.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA3086
|
Pseudomonas aeruginosa
PAO1 |
New gene name: glpG. New product name: rhomboid family protease GlpG. New product name confidence: Class 1. New PMIDs: 17059825, 19761755.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA4534
|
Pseudomonas aeruginosa
PAO1 |
New product name: N-acetyltransferase. New product name confidence: Class 1. New PMID: 28412357.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA4279
|
Pseudomonas aeruginosa
PAO1 |
New product name: type III pantothenate kinase. New product name confidence: Class 1. New PMID: 16905099.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA3263
|
Pseudomonas aeruginosa
PAO1 |
New gene name: rdgC. New product name: recombination-associated protein RdgC. New product name confidence: Class 1. New PMID: 17426134.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA3302
|
Pseudomonas aeruginosa
PAO1 |
New gene name: phaJ1. New product name: PhaJ1. New product name confidence: Class 1. New PMID: 26386053.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA4991
|
Pseudomonas aeruginosa
PAO1 |
New product name: FAD dependent oxidoreductase . New product name confidence: Class 1. New comment: From publication: Analysis of the structure of PA4991 identifies this enzyme as a member of the GR2 family of flavoenzymes. Enzymatic assays did not support a function as a G3P dehydrogenase/oxidase or an amino-acid oxidase as hypothesized based on the three-dimensional structure. New PMID: 26841760.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA3764
|
Pseudomonas aeruginosa
PAO1 |
New gene name: mltF. New product name: lytic transglycosylase, MltF. New product name confidence: Class 1. New PMID: 27618662.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA0616
|
Pseudomonas aeruginosa
PAO1 |
New product name: R2 pyocin membrane-piercing spike. New product name confidence: Class 3. New PMID: 34648550.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA0115
|
Pseudomonas aeruginosa
PAO1 |
New product name: Acyl-CoA N-acyltransferase. New product name confidence: Class 3. New PMID: 34648550.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA5396
|
Pseudomonas aeruginosa
PAO1 |
New product name: amidohydrolase. New product name confidence: Class 3. New PMID: 34648550.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA5201
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: tex. New product name: transcriptional accessory protein Tex. New product name confidence: Class 1. New comment: Tex binds dsRNA, ssRNA, dsDNA, and ssDNA, with a strong preference for ssRNA. New PMIDs: 18321528, 8755871, 16997528.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA1221
|
Pseudomonas aeruginosa
PAO1 |
New product name: nonribosomal peptide synthetase. New product name confidence: Class 1. New PMID: 22452656.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA5185
|
Pseudomonas aeruginosa
PAO1 |
New product name: thiolester hydrolase. New product name confidence: Class 1. New comment: PA5185 showed significant thioesterase activity against propionyl-CoA. New PMIDs: 19898606, 15307895, 22439787.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA5202
|
Pseudomonas aeruginosa
PAO1 |
New product name: thiolester hydrolase. New product name confidence: Class 1. New PMID: 22439787.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA2801
|
Pseudomonas aeruginosa
PAO1 |
New product name: thiolester hydrolase. New product name confidence: Class 1. New PMID: 22439787.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA1865
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: FAN1. New product name: Fanconi anemia-associated nuclease 1. New product name confidence: Class 1. New PMID: 25319828.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA4992
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative aldo-keto reductase. New product name confidence: Class 3. New PMID: 23295481.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA4872
|
Pseudomonas aeruginosa
PAO1 |
New product name: oxaloacetate decarboxylase. New product name confidence: Class 1. New PMID: 18081320.
|
Filip Kovacic, Institute of Molecular Enzyme Technology, Germany
|
| Nov 20, 2022 |
PA2559.1
|
Pseudomonas aeruginosa
PAO1 |
New comment: Loss of SrfA abolishes biofilm formation;SrfA interacts with PA2559 and PA2560.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA1607
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative DNA-binding protein. New product name confidence: Class 3. New PMID: 17322537.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA4017
|
Pseudomonas aeruginosa
PAO1 |
New product name: thioesterase. New PMID: 17316683.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA5148
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative oxidative stress-related protein. New product name confidence: Class 3. New comment: The structure of E. coli YggX displays a fold consisting of two N-terminal antiparallel beta-sheets and three alpha-helices, which shares significant structural similarity to the crystal structure of PA5148 . New PMID: 15883188.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA1618
|
Pseudomonas aeruginosa
PAO1 |
New product name: thiolester hydrolase. New product name confidence: Class 1. New PMID: 28741300.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA5279
|
Pseudomonas aeruginosa
PAO1 |
New product name: GAF domain containing protein. New product name confidence: Class 3.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA1377
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative acetyltransferase. New product name synonym: pitax. New product name confidence: Class 3. New PMID: 18453699.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA4866
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative phosphinothricin acetyltransferase. New product name synonym: pita. New product name confidence: Class 3. New PMID: 16161106.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA3787
|
Pseudomonas aeruginosa
PAO1 |
New product name: putative peptidase. New product name confidence: Class 3. New PMIDs: 32482720, 30018106.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA3664
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: yffB. New product name: putative glutathione-dependent thiol reductase. New product name confidence: Class 3. New PMIDs: 15102337, 21904062.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA14_59050
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: NdpA2. New product name: NdpA2. New product name confidence: Class 1. New PMID: 34643711.
|
Gauthier Dangla-Pelissier, CNRS, France
|
| Nov 20, 2022 |
PA14_59060
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: tprA. New product name: TprA. New product name synonym: Transfer of PAPI-1 regulator A. New product name confidence: Class 1. New comment: Binds promoter at region . New PMID: 34643711.
|
Gauthier Dangla-Pelissier, CNRS, France
|
| Nov 20, 2022 |
PA14_59250
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: pilN2. New gene name synonym: type IV b pilus protein. New product name: PilN2. New product name confidence: Class 1. New PMID: 34643711.
|
Gauthier Dangla-Pelissier, CNRS, France
|
| Nov 20, 2022 |
PA2504
|
Pseudomonas aeruginosa
PAO1 |
New product name: TUDOR-like domain containing protein. New product name confidence: Class 3. New PMID: 34575996.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA3470
|
Pseudomonas aeruginosa
PAO1 |
New product name: NUDIX hydrolase. New product name confidence: Class 3. New comment: Pyocyanin content was increased in a PA3470 mutant [PMID:32419387]; PA3470 mutant is susceptible to killing by H2O2 [PMID:32419387]. New PMID: 32419387.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA3754
|
Pseudomonas aeruginosa
PAO1 |
New product name: NUDIX hydrolase. New product name confidence: Class 3. New comment: Pyocyanin content was increased in a PA3754 mutant [PMID:32419387]; PA3754 mutant is susceptible to killing by H2O2 [PMID:32419387]. New PMID: 32419387.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA4400
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: NUDIX hydrolase. New product name confidence: Class 3. New comment: Pyocyanin content was increased in a PA4400 mutant [PMID:32419387]; Inactivation of PA4400 stimulates pyocyanin production, severely impairs swarming motility, decreases virulence, and increases resistance to piperacillin [PMID:32419387]. New PMID: 32419387.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA4841
|
Pseudomonas aeruginosa
PAO1 |
New product name: NUDIX hydrolase. New product name confidence: Class 3. New comment: PA4841 mutant is susceptible to killing by H2O2 [PMID:32419387]. New PMID: 32419387.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA5176
|
Pseudomonas aeruginosa
PAO1 |
New product name: NUDIX hydrolase. New product name confidence: Class 3. New comment: Lack of PA5176 NUDIX hydrolase increases bacterial resistance to killing by H2O2, however deletion of NUDIX hydrolases PA3470, PA3754, PA4400, and PA4841 causes sensitization to H2O2 killing [PMID:32419387];PA5176 mutants display attenuated virulence compared to the wild type in C. elegans infection model [PMID:32419387]. New PMID: 32419387.
|
Joanna Drabinska, Institute of Biochemistry and Biophysics, Poland
|
| Nov 20, 2022 |
PA0172
|
Pseudomonas aeruginosa
PAO1 |
New comment: SiaA is a functional Mg2+/Mn2+-dependent protein-phosphatase (PP2C-type) with activity towards the phosphorylated threonine T68 of SiaC (PA0170) [PMID:33156827];The SiaABC threonine phosphorylation pathway controls aggregate/biofilm formation in response to carbon availability (glucose, succinate, ethanol, 2,3-butanediol)[PMID:33156827];The SiaA-PP2C domain is arranged as a homodimer in the crystal asymmetric unit (PDB-ID: 6K4E) and its phosphatase activity can be inhibited by fumonisin B1[PMID:33156827]. New PMID: 33156827.
|
Janosch Klebensberger, University of Stuttgart, Institute of Technical Biochemistry, Stuttgart, Germany
|
| Nov 20, 2022 |
PA0171
|
Pseudomonas aeruginosa
PAO1 |
New gene name: siaB. New product name: SiaB. New product name confidence: Class 1. New comment: SiaB is a functional Mg2+-dependent protein kinase with activity towards the non-phosphorylated threonine T68 of SiaC [PMID:33156827]; The SiaABC threonine phosphorylation pathway controls aggregate/biofilm formation in response to carbon availability (glucose, succinate, ethanol, 2,3-butanediol) [PMID:33156827]. New PMID: 33156827.
|
Janosch Klebensberger, University of Stuttgart, Institute of Technical Biochemistry, Stuttgart, Germany
|
| Nov 20, 2022 |
PA0170
|
Pseudomonas aeruginosa
PAO1 |
New gene name: siaC. New product name: SiaC. New product name synonym: putative anti-sigma factor antagonist. New product name confidence: Class 1. New comment: The phosphorylation status of T68 of the SiaC protein is balanced by the phosphatase activity of SiaA (PA0172) and kinase activity of SiaB (PA0171)[PMID:33156827];The SiaABC threonine phosphorylation pathway controls aggregate/biofilm formation in response to carbon availability (glucose, succinate, ethanol, 2,3-butanediol)[PMID:33156827];The SiaC protein shares structural similarities with anti-sigma factor antagonists (PDB-ID: 6K4F)[PMID:33156827]. New PMID: 33156827.
|
Janosch Klebensberger, University of Stuttgart, Institute of Technical Biochemistry, Stuttgart, Germany
|
| Nov 20, 2022 |
PA14_27640
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: rebP1. New product name: RebP1. New product name synonym: protein associated with synthesis and assembly of refractile inclusion bodies. New product name confidence: Class 1. New PMID: 34326342.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA14_27630
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: rebP2. New product name: RebP2. New product name synonym: protein associated with synthesis and assembly of refractile inclusion bodies. New product name confidence: Class 1. New PMID: 34326342.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_3546
|
Pseudomonas putida
KT2440 |
New gene name: hskA. New product name: hybrid sensor kinase, HskA. New product name synonym: two-component system sensor histidine kinase/response regulator. New product name confidence: Class 1. New comment: HskA is a hybrid sensor kinase controlling the composition of the electron transport chain in response to redox signals. New PMIDs: 23584971, 24249291.
|
Fernando Rojo, Centro Nacional de Biotecnologia, CSIC, Madrid, Spain
|
| Nov 20, 2022 |
PA0223
|
Pseudomonas aeruginosa
PAO1 |
New gene name: ergB. New product name: ErgB. New PMID: 31925438.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA0224
|
Pseudomonas aeruginosa
PAO1 |
New gene name: ergA. New product name: ErgA. New PMID: 31925438.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA0225
|
Pseudomonas aeruginosa
PAO1 |
New gene name: erfA. New product name: ErfA. New product name confidence: Class 1. New PMID: 31925438.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA0535
|
Pseudomonas aeruginosa
PAO1 |
New product name: transcriptional regulator. New product name confidence: Class 1. New comment: PA0535 inhibits the expression of pauB1[PMID:33436508];PA0535 identified as a regulator of the _-glutamylation pathway[PMID:33436508]. New PMID: 33436508.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA1359
|
Pseudomonas aeruginosa
PAO1 |
New product name: transcriptional regulator. New product name confidence: Class 1. New comment: PA1359 regulator negatively controls the expression of the PA1360 gene[PMID:33436508]. New PMID: 33436508.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA1884
|
Pseudomonas aeruginosa
PAO1 |
New product name: transcriptional regulator. New product name confidence: Class 1. New comment: PA1884 negatively regulates the expression of PA1885[PMID:33436508]. New PMID: 33436508.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA4987
|
Pseudomonas aeruginosa
PAO1 |
New product name: transcriptional regulator. New product name confidence: Class 1. New comment: PA4982 negatively regulates the expression of PA4985 and PA4986[PMID:33436508]. New PMID: 33436508.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA5301
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 23794626.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA2476
|
Pseudomonas aeruginosa
PAO1 |
New comment: Yu, Liang, et al. A novel copper-sensing two-component system for inducing Dsb gene expression in bacteria.Science Bulletin(2021). https://doi.org/10.1016/j.scib.2021.03.003.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA2477
|
Pseudomonas aeruginosa
PAO1 |
New gene name: dsbE. New product name: thiol:disulfide interchange protein DsbE. New product name confidence: Class 2. Name transferred from: UniProtKB:P0AA86. New comment: Yu, Liang, et al. A novel copper-sensing two-component system for inducing Dsb gene expression in bacteria Science Bulletin (2021). https://doi.org/10.1016/j.scib.2021.03.003. New PMID: 17015663.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA2478
|
Pseudomonas aeruginosa
PAO1 |
New gene name: dsbD. New product name: thiol:disulfide interchange protein DsbD. New product name confidence: Class 2. Name transferred from: UniProtKB:P36655. New comment: Yu, Liang, et al. A novel copper-sensing two-component system for inducing Dsb gene expression in bacteria. Science Bulletin (2021). https://doi.org/10.1016/j.scib.2021.03.003. New PMID: 32305461.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA2479
|
Pseudomonas aeruginosa
PAO1 |
New gene name: dsbR. New product name: Dsb-associated Regulator, DsbR. New product name confidence: Class 1. New comment: DsbRS directly regulates the expression of the dsbDEG and dsbRS operons [doi.org/10.1016/j.scib.2021.03.003].
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA2480
|
Pseudomonas aeruginosa
PAO1 |
New gene name: dsbS. New product name: Dsb-associated Sensor, DsbS. New product name confidence: Class 1. New comment: DsbRS directly regulates the expression of the dsbDEG and dsbRS operons [doi.org/10.1016/j.scib.2021.03.003].
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA4101
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33668961.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA4102
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33668961.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA3191
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33670077.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA3192
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33670077.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA5036
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33670077.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA1179
|
Pseudomonas aeruginosa
PAO1 |
New comment: PhoP directly controls the expression of PA14_46900, PA14_50740 and PA14_52340, and the operons of PA14_11970-PA14_11960 and PA14_52350-PA14_52370 [PMID:33572426]; PhoP-PhoQ two-component regulatory system contributes to bacterial tolerance to polymyxin B by directly regulating genes involved in LPS modification and membrane integrity maintenance[PMID:33572426] . New PMID: 33572426.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA1180
|
Pseudomonas aeruginosa
PAO1 |
New comment: PhoP-PhoQ two-component regulatory system contributes to bacterial tolerance to polymyxin B by directly regulating genes involved in LPS modification and membrane integrity maintenance[PMID:33572426] . New PMID: 33572426.
|
Julian Trouillon, ETH Zurich, Switzerland
|
| Nov 20, 2022 |
PA4130
|
Pseudomonas aeruginosa
PAO1 |
New gene name: nirA. New product name: ferredoxin-dependent nitrite reductase, NirA. New product name confidence: Class 1. New PMID: 33879591.
|
Samuel Fenn, University of Nottingham
|
| Nov 20, 2022 |
PFLCHA0_c06640
|
Pseudomonas protegens
CHA0 |
New gene name: cobG. New product name: CobG. New product name confidence: Class 1. New comment: Monooxygenase which converts Precorrin-3A to Precorrin-3b as part of vitamin B12 biosynthesis pathway [PMID:19068481]; Incorrectly identified previously as NirA due to containing Nitrite/Sulphite reductase ferredoxin-like half domains which are domains also found in CobG. New PMID: 19068481.
|
Samuel Fenn, University of Nottingham
|
| Nov 20, 2022 |
PA3600
|
Pseudomonas aeruginosa
PAO1 |
New gene name: rpmJ2. New product name: RpmJ2. New product name confidence: Class 2. Name transferred from: UniProtKB:Q8FKL1. New PMID: 17400736.
|
Danielle M. Vermilyea, Geisel School of Medicine at Dartmouth
|
| Nov 20, 2022 |
PA3601
|
Pseudomonas aeruginosa
PAO1 |
New gene name: rpmE2. New product name: RpmE2. New product name confidence: Class 2. Name transferred from: UniProtKB:P0A7N1. New PMID: 17400736.
|
Danielle M. Vermilyea, Geisel School of Medicine at Dartmouth
|
| Nov 20, 2022 |
PA14_17710
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: rpmJ2. New product name: RpmJ2. New product name confidence: Class 2. Name transferred from: UniProtKB:Q8FKL1. New PMID: 17400736.
|
Danielle M. Vermilyea, Geisel School of Medicine at Dartmouth
|
| Nov 20, 2022 |
PA14_17700
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New product name confidence: Class 2. Name transferred from: UniProtKB:P0A7N1. New PMID: 17400736.
|
Danielle M. Vermilyea, Geisel School of Medicine at Dartmouth
|
| Nov 20, 2022 |
PA1624
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 33263573.
|
Christian Feiler, Helmholtz-Zentrum Berlin, Germany
|
| Nov 20, 2022 |
PA1673
|
Pseudomonas aeruginosa
PAO1 |
New gene name: mhr. New product name: microoxic hemerythrin, Mhr. New product name confidence: Class 1. New PMID: 31980538.
|
Michelle Clay, Dartmouth College
|
| Nov 20, 2022 |
PA14_42860
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: mhr. New product name: microoxic hemerythrin, Mhr. New product name confidence: Class 1. New PMID: 31980538.
|
Michelle Clay, Dartmouth College
|
| Nov 20, 2022 |
PA2146
|
Pseudomonas aeruginosa
PAO1 |
New comment: PA2146 encodes a small protein that is prevalent in various Gram-negative and Gram-positive bacterial species and highly expressed in biofilms formed by P. aeruginosa laboratory and clinical isolates [PMID:35798749]. New PMID: 35798749.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA1000
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 35604161.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA0285
|
Pseudomonas aeruginosa
PAO1 |
New gene name: pipA. New product name: cyclic di-GMP phosphodiesterase, PipA. New product name confidence: Class 1. New PMID: 35638845.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA0575
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 35732459.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA3366.1
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 35262393.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA14_01710
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name synonym: ahpC1. New comment: Referred to as AhpC1 in PMID:PA14_01710;AhpC1 efficiently scavenges oxidants from inflammatory oxidative burst [PMID:34315109];AhpC1 provides a mechanism for P. aeruginosa subverting immune system [PMID:34315109];AhpC1 increases P. aeruginosa virulence [PMID:34315109];AhpC1 is key to neutralize the physiological organic peroxide, urate hydroperoxide [PMID:34315109];. New PMID: 34315109.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA14_19490
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name synonym: ahpC2. New comment: Referred to as AhpC2 in PMID:34315109. New PMID: 34315109.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_4001
|
Pseudomonas putida
KT2440 |
New PMID: 35726888.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_4482
|
Pseudomonas putida
KT2440 |
New gene name: argR. New product name: ArgR. New product name confidence: Class 1. New PMID: 35254100.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_2969
|
Pseudomonas putida
KT2440 |
New gene name: mreA. New product name: metal-binding protein, MreA. New product name confidence: Class 1. New PMID: 35322302.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_3665
|
Pseudomonas putida
KT2440 |
New gene name: cahR. New product name: creatine amidohydrolase regulator, CahR. New product name confidence: Class 1. New PMID: 35266867.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_4959
|
Pseudomonas putida
KT2440 |
New gene name: cfcR. New gene name synonym: Rup4959. New product name: CfcR. New product name confidence: Class 1. New PMIDs: 35001503, 27489550.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_3761
|
Pseudomonas putida
KT2440 |
New gene name: cfcA. New product name: CfcA. New product name confidence: Class 1. New PMID: 35001503.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_2561
|
Pseudomonas putida
KT2440 |
New product name: extracellular haem-peroxidase. New product name confidence: Class 1. New PMID: 23766110.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_5031
|
Pseudomonas putida
KT2440 |
New gene name: hutT. New product name: HutT. New product name confidence: Class 1. New PMID: 34245008.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_4695
|
Pseudomonas putida
KT2440 |
New gene name: cbrA. New product name: sensor kinase, CbrA. New product name confidence: Class 1. New PMIDs: 32214184, 26148710.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_4696
|
Pseudomonas putida
KT2440 |
New gene name: cbrB. New product name: response regulator, CbrB. New product name confidence: Class 1. New PMID: 32214184.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_1695
|
Pseudomonas putida
KT2440 |
New gene name: mxtR. New gene name synonym: crbS. New product name: sensor kinase MxtR. New product name synonym: CrbS. New product name confidence: Class 1. New PMID: 34442637.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PP_1635
|
Pseudomonas putida
KT2440 |
New gene name: erdR. New gene name synonym: crbR. New product name: response regulator ErdR. New product name synonym: CrbR. New product name confidence: Class 1. New PMID: 34442637.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PFLU4471
|
Pseudomonas fluorescens
SBW25 |
New gene name: crbS. New product name: sensor kinase CrbS. New product name confidence: Class 1. New PMID: 29250042.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PFLU1195
|
Pseudomonas fluorescens
SBW25 |
New gene name: crbR. New product name: response regulator CrbR. New product name confidence: Class 1. New PMID: 29250042.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PSEEN1405
|
Pseudomonas entomophila
L48 |
New gene name: crbS. New product name: sensor kinase CrbS. New product name confidence: Class 1. New PMID: 28542616.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PSEEN4122
|
Pseudomonas entomophila
L48 |
New gene name: crbR. New product name: response regulator CrbR. New product name confidence: Class 1. New PMID: 28542616.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Nov 20, 2022 |
PA2121
|
Pseudomonas aeruginosa
PAO1 |
New gene name: bsrA. New product name: LysR-type transcriptional regulator, BsrA. New product name confidence: Class 1. New PMIDs: 34254827, 31269803.
|
Geoffrey L. Winsor, Brinkman Lab, Simon Fraser University, Canada
|