| Oct 9, 2019 |
PA3008
|
Pseudomonas aeruginosa
PAO1 |
New gene name: sulA. New product name: SulA. New product name confidence: Class 1. New PMID: 12808143.
|
Boo Shan Tseng, University of Nevada, USA
|
| Oct 9, 2019 |
PA5539
|
Pseudomonas aeruginosa
PAO1 |
New product name: RidA subfamily protein. New product name synonym: 2-aminoacrylate deaminase. New product name confidence: Class 1. New comment: Deaminates 2-aminoacrylate in vitro. New PMIDs: 28957411, 30181125.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0814
|
Pseudomonas aeruginosa
PAO1 |
New product name: Rid1 subfamily protein. New product name confidence: Class 1. New PMID: 28957411.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA5083
|
Pseudomonas aeruginosa
PAO1 |
New product name: Rid2 subfamily protein. New product name confidence: Class 1. New PMID: 28957411.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3123
|
Pseudomonas aeruginosa
PAO1 |
New product name: RidA subfamily protein. New product name confidence: Class 1. New PMID: 30181125.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PSPTO_0102
|
Pseudomonas syringae pv. tomato
DC3000 |
New product name: Rid2 subfamily protein. New product name confidence: Class 1. New PMID: 28957411.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PFL_1385
|
Pseudomonas protegens
Pf-5 |
New product name: Rid3 subfamily protein. New product name confidence: Class 1. New PMID: 28957411.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PSPTO_3006
|
Pseudomonas syringae pv. tomato
DC3000 |
New product name: Rid3 subfamily protein. New product name confidence: Class 1. New PMID: 28957411.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4608
|
Pseudomonas aeruginosa
PAO1 |
New gene name: mapZ. New product name: MapZ. New product name synonym: methyltransferase-associated PilZ. New product name confidence: Class 1. New PMIDs: 27811183, 30804897, 21310957.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_60970
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: mapZ. New product name: MapZ. New product name synonym: methyltransferase-associated PilZ. New product name confidence: Class 1. New PMIDs: 27811183, 30804897, 21310957.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3348
|
Pseudomonas aeruginosa
PAO1 |
New gene name: cheR1. New product name: CheR1. New product name confidence: Class 1. New PMID: 21445368.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA5017
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 17521365.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0175
|
Pseudomonas aeruginosa
PAO1 |
New gene name: cheR2. New product name: CheR2. New product name confidence: Class 1. New PMID: 24714571.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0412
|
Pseudomonas aeruginosa
PAO1 |
New product name synonym: CheR3. New PMID: 24714571.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2735
|
Pseudomonas aeruginosa
PAO1 |
New product name: type I HsdM methyltransferase. New product name confidence: Class 1. New PMIDs: 30865771, 28223461.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
Q008_04386
|
Pseudomonas aeruginosa
JJ692 |
New gene name: paeM1. New product name: PaeM1. New product name confidence: Class 1. New PMID: 30988031.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
B5D65_RS28940
|
Pseudomonas aeruginosa
DSM 50071 |
New gene name: paeM2. New product name: PaeM2. New product name confidence: Class 1. New PMID: 30988031.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0660
|
Pseudomonas aeruginosa
PAO1 |
New product name: NAD(P)H:quinone reductase. New product name confidence: Class 1. New PMID: 31075192.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2473
|
Pseudomonas aeruginosa
PAO1 |
New product name: maleylpyruvate isomerase. New product name confidence: Class 1. New PMID: 31092332.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4191
|
Pseudomonas aeruginosa
PAO1 |
New product name: isopenicillin-N synthase. New product name confidence: Class 1. New PMID: 31097228.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0847
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 31114257.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4389
|
Pseudomonas aeruginosa
PAO1 |
New product name: 3-oxacyl-acyl carrier protein reductase. New product name confidence: Class 1. New PMID: 31231314.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2967
|
Pseudomonas aeruginosa
PAO1 |
New PMID: 31231314.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4888
|
Pseudomonas aeruginosa
PAO1 |
New comment: DesB contributes to adaptation to high salinity by positively regulating the synthesis of osmoprotectants. New PMIDs: 26230088, 31298570.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1244
|
Pseudomonas aeruginosa
PAO1 |
New gene name: qslA. New product name: QslA. New product name confidence: Class 1. New comment: Start site updated to 1348063 based on purified QslA_FLAG fusion protein analysis by Edman degradation (PMID:213921320). New PMIDs: 31405911, 21392132.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3082
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0291
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA5171
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0958
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4270
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4269
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA5112
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1092
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3186
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4385
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4423
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0427
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1777
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1011
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1288
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4067
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0595
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2760
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3800
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0622
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4675
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3790
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0972
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4525
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4974
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA1178
|
Pseudomonas aeruginosa
PAO1 |
New comment: Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). New PMIDs: 22909304, 21751344, 26303878.
|
Ashmeet Madyan, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0259
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tla3. New product name: Type 6 lipase adaptor, Tla3. New product name confidence: Class 1. New comment: Translation start site moved to position 291154 based on upstream ribosome bindng site and significant Kolaskar score (PMID: 31231326).;Tla3 is localized in the cytoplasm of P. aeruginosa and is required for Tle3 secretion and antibacterial activity in P. aeruginosa. Direct interaction with Tle3 and VgrG2b. New PMID: 31231326.
|
Sophie Bleves, Institute of Microbiology of the Mediterranean, France
|
| Oct 9, 2019 |
PA0260
|
Pseudomonas aeruginosa
PAO1 |
New product name: Type 6 lipase effector, Tle3. New product name confidence: Class 1. New comment: Tle3 is an antibacterial T6SS effector. Toxic when delivered into the periplasm of prey bacteria. Tle3 is dependent on the H2-T6SS machinery , Tla3 and VgrG2b for its secretion. Tli3 neutralizes its antibacterial activity. New PMIDs: 26037124, 31231326.
|
Sophie Bleves, Institute of Microbiology of the Mediterranean, France
|
| Oct 9, 2019 |
PA0261
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tli3. New product name: Type 6 lipase immunity, Tli3. New product name confidence: Class 1. New comment: The annoted ATG has been checked in P. aeruginosa and is correct. Directly interacts with Tle3. Cognate immunity protein for Tle3 (in P. aeruginosa and in the heterologous host E. coli) and for VgrG2b C-Terminal domain (in the heterologous host E. coli) (PMID:31231326). New PMID: 31231326.
|
Sophie Bleves, Institute of Microbiology of the Mediterranean, France
|
| Oct 9, 2019 |
PA0262
|
Pseudomonas aeruginosa
PAO1 |
New product name confidence: Class 1. New comment: H2-T6SS evolved effector demonstrating antibacterial and anti-eukaryotic activity (trans-kingdom toxin) delivered into epithelial cells through the H2-T6SS machinery and VgrG2a (PA1511); The C-Terminal domain of VgrG2b interacts with the gamma-tubulin complex to promote a microtubule-dependant internalization of P. aeruginosa into non phagocytic cells (PMID:26037124); Required for Tle3 secretion, the C-Terminal domain of VgrG2b is antibacterial when delivered into the periplasm of prey bacteria (in the heterologous host E. coli) and its toxicity relies on an intact protease catalytic site (residus 932-941, PFAM04298);Tli3 neutralizes the antibacterial activity of VgrG2b (PMID:31231326). New PMIDs: 26037124, 31231326.
|
Sophie Bleves, Institute of Microbiology of the Mediterranean, France
|
| Oct 9, 2019 |
PA5174
|
Pseudomonas aeruginosa
PAO1 |
New gene name: fabY. New product name: beta-acetoacetyl-acyl carrier protein synthase FabY. New product name synonym: beta-ketoacyl-[acyl-carrier-protein] synthase III. New product name confidence: Class 1. New comment: FabY is abeta-ketoacyl-acyl carrier protein synthase I/II (KASI/II) family member. P. aeruginosa is unusual among bacterial because this step in bacterial fatty acid synthesis is normally carried out by FabH (a member of the KASIII family). New PMIDs: 22753059, 22753057, 24145528, 22821980.
|
David Six, VenatoRx Pharmaceuticals, Inc
|
| Oct 9, 2019 |
PA3286
|
Pseudomonas aeruginosa
PAO1 |
New product name: beta-acetoacetyl-acyl carrier protein synthase. New product name confidence: Class 1. New comment: PA3286 is also a beta-acetoacetyl-acyl carrier protein synthase. It belongs to the KASIII family (like FabH), but has a unique preference for octanoyl-CoA allowing it to shunt exogenous fatty acids from fatty acid beta-oxidation directly into fatty acid synthesis. Despite this specificity it does retains sufficient activity with acetyl-CoA to cover for FabY in initiating fatty acid synthesis. PA3286 is synthetically lethal with PA5174. New PMIDs: 22753057, 22821980.
|
David Six, VenatoRx Pharmaceuticals, Inc
|
| Oct 9, 2019 |
PA0423.1
|
Pseudomonas aeruginosa
PAO1 |
New gene name: AS1974. New product name confidence: Class 1. New comment: Overexpression of AS1974 was able to transform a MDR clinical strain to drug hypersusceptibility;Downregulated in all drug-resistant strains compared with all drug-susceptible strains.;Binds to Hfq with high specificity;AS1974 sRNA expression is regulated by methylation in all MDR strains examined (PMID:30901580). New PMID: 30901580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0423.2
|
Pseudomonas aeruginosa
PAO1 |
New gene name: AS1974-shorter1. New product name confidence: Class 1. New PMID: 30901580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2768.1
|
Pseudomonas aeruginosa
PAO1 |
New gene name: AS2779. New product name confidence: Class 1. New comment: Downregulated in all drug-resistant strains compared with all drug-susceptible strains.;Binds to Hfq with high specificity. New PMID: 30901580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2770.1
|
Pseudomonas aeruginosa
PAO1 |
New gene name: IGR2780. New product name confidence: Class 1. New comment: Downregulated in all drug-resistant strains compared with all drug-susceptible strains.;Binds to Hfq with high specificity. New PMID: 30901580.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2795
|
Pseudomonas aeruginosa
PAO1 |
New gene name: dusA. New gene name synonym: DusA. New product name: dihydrouridine synthase A . New product name confidence: Class 1. New PMID: 30928375.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3920
|
Pseudomonas aeruginosa
PAO1 |
New gene name: copA1 . New gene name synonym: cueA. New product name: CopA1. New product name confidence: Class 1. New comment: PA3920 was originally identified as cueA in 2005 where its role in Cu resistance/tolerance was confirmed (PMID:16128398). Referred to as cueA in 2010 where role in Cu tolerance was also confirmed (PMID: 20233934).; PA3920 later referred to as CopA1 i in order to align with naming and homologies (PMID:28760827, PMID:21091508). . New PMIDs: 16128398, 20233934, 28760827, 21091508.
|
Keith Poole, Queen's University, Canada
|
| Oct 9, 2019 |
PA1549
|
Pseudomonas aeruginosa
PAO1 |
New gene name: copA2. New product name: CopA2. New product name confidence: Class 1. New PMID: 21091508.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3907
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tseT. New product name: TOX-REase-5 domain-containing effector, TseT. New product name confidence: Class 1. New PMID: 29632369.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3908
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tsiT. New gene name synonym: type VI immunity for Tox-Rease. New product name: immunity protein, TsiT. New product name confidence: Class 1. New PMID: 29632369.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3905
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tecT. New product name: type VI effector chaperone for Tox-Rease, TecT. New product name confidence: Class 1. New comment: PAAR4, TecT and co-TecT are required for TseT-mediated killing.;TecT and co-TecT form a complex that dissociates upon PAAR4 binding to TecT. New PMID: 29632369.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3906
|
Pseudomonas aeruginosa
PAO1 |
New product name: co-chaperone, co-TecT. New product name confidence: Class 1. New comment: PAAR4, TecT and co-TecT are required for TseT-mediated killing.;TecT and co-TecT form a complex that dissociates upon PAAR4 binding to TecT. New PMID: 29632369.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3904
|
Pseudomonas aeruginosa
PAO1 |
New product name: PAAR4. New product name confidence: Class 1. New comment: PAAR4, TecT and co-TecT are required for TseT-mediated killing. New PMID: 29632369.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4021
|
Pseudomonas aeruginosa
PAO1 |
New gene name: eatR. New product name: regulator of ethanolamine catabolism, EatR. New product name confidence: Class 1. New PMID: 27325678.
|
Benjamin R. Lundgren, SUNY-ESF, Syracuse, New York, USA.
|
| Oct 9, 2019 |
PA4022
|
Pseudomonas aeruginosa
PAO1 |
New comment: Part of the PA4022-eat-eutBC operon responsible for ethanolamine catabolism. New PMID: 27325678.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4023
|
Pseudomonas aeruginosa
PAO1 |
New gene name: eat. New product name: ethanolamine transporter, Eat. New product name confidence: Class 2. New comment: Part of the PA4022-eat-eutBC operon responsible for ethanolamine catabolism. New PMID: 27325678.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4024
|
Pseudomonas aeruginosa
PAO1 |
New product name: ethanolamine-ammonia lyase, large subunit, EutB. New comment: Part of the PA4022-eat-eutBC operon responsible for ethanolamine catabolism. New PMID: 27325678.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4025
|
Pseudomonas aeruginosa
PAO1 |
New gene name: eutC. New product name: ethanolamine-ammonia lyase, small subunit, EutC. New product name confidence: Class 2. New comment: Part of the PA4022-eat-eutBC operon responsible for ethanolamine catabolism. New PMID: 27325678.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0575
|
Pseudomonas aeruginosa
PAO1 |
New gene name: rmcA. New product name: redox regulator of c_di_GMP, RmcA. New product name confidence: Class 1. New PMIDs: 30106221, 28607054.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_07500
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: rmcA. New product name: redox regulator of c_di_GMP, RmcA. New product name confidence: Class 1. New PMIDs: 30106221, 28607054.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0727
|
Pseudomonas aeruginosa
PAO1 |
New product name: Pf replication initiator protein. New product name confidence: Class 1. New PMIDs: 30475408, 27303696.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA5443
|
Pseudomonas aeruginosa
PAO1 |
New product name: UvrD helicase. New product name confidence: Class 1. New PMID: 27303696.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0728
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: intF4. New PMID: 30475408.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0716.1
|
Pseudomonas aeruginosa
PAO1 |
New gene name: pf4r. New product name: Pf4 repressor C. New product name confidence: Class 1. New PMID: 30475408.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA0716.2
|
Pseudomonas aeruginosa
PAO1 |
New gene name: xisF4. New product name: Pf4 prophage excisionase, XisF4. New product name confidence: Class 1. New PMID: 30475408.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_49020
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: pf5r. New product name: Pf5 repressor C. New product name confidence: Class 1. New PMID: 30475408.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_49010
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: xisF5. New product name: Pf5 prophage excisionase, XisF5. New product name confidence: Class 1. New PMID: 30475408.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA4958
|
Pseudomonas aeruginosa
PAO1 |
New gene name: fimW. New product name: FimW. New product name confidence: Class 1. New comment: FimW is a cyclic-di-GMP receptor that regulates Type IV pili elongation.;A pilZ domain starting at amino acid 323 and stopping at amino acid 492 was manually validated;Site-directed mutagenesis demonstrated that the ligand (cyclic-di-GMP) binding motif is R324, R328, N435, S437, G440. New PMID: 30581112.
|
Benoît-Joseph Laventie, Jenal Lab, Biozentrum of the University of Basel, Switzerland
|
| Oct 9, 2019 |
PA0124
|
Pseudomonas aeruginosa
PAO1 |
New product name: ParE toxin. New product name confidence: Class 1. New comment: ParDE toxin_antitoxin system. New PMID: 30427086.
|
Christina R. Bourne, University of Oklahoma, USA
|
| Oct 9, 2019 |
PA0125
|
Pseudomonas aeruginosa
PAO1 |
New product name: ParD antitoxin. New product name confidence: Class 1. New comment: ParDE toxin_antitoxin system. New PMID: 30427086.
|
Christina R. Bourne, University of Oklahoma, USA
|
| Oct 9, 2019 |
PA5072
|
Pseudomonas aeruginosa
PAO1 |
New gene name: mcpK. New product name: McpK. New product name confidence: Class 1. New PMID: 27965656.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2654
|
Pseudomonas aeruginosa
PAO1 |
New gene name: tlpQ. New product name: TlpQ. New PMID: 30425146.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2359
|
Pseudomonas aeruginosa
PAO1 |
New gene name synonym: sfnR2. New product name synonym: SfnR2. New PMID: 30478084.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA2354
|
Pseudomonas aeruginosa
PAO1 |
New gene name: sfnR1. New product name: SfnR1. New product name confidence: Class 1. New comment: Described as Sfa3 in PMID:24204589. According to PseudoCAP conventions, earlier usage of Sfa3 takes precedence over SnfR2 in PMID:30478084. New PMID: 30478084.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3954
|
Pseudomonas aeruginosa
PAO1 |
New gene name: sfnG. New product name: FMNH2-dependent monooxygenase, SfnG. New product name confidence: Class 2. Name transferred from: PseudoCAP:Pfl01_2879. New PMID: 27392454.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
Pfl01_2879
|
Pseudomonas fluorescens
Pf0-1 |
New gene name: sfnG. New product name: FMNH2-dependent monooxygenase, SfnG. New product name confidence: Class 1. New PMID: 27392454.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
Pfl01_3915
|
Pseudomonas fluorescens
Pf0-1 |
New gene name: msuE. New product name: NADH-dependent FMN reductase, MsuE. New product name confidence: Class 1. New PMID: 27392454.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_56180
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New PMID: 31474950.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_20700
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: flgZ. New product name: FlgZ. New product name confidence: Class 1. New comment: N_terminal protein sequencing by Edman degradation revealed the amino acid sequence PNPFVEEAGP as the beginning of the FlgZ protein (PMID:30864240). New PMIDs: 27114465, 31474950, 30864240.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA3353
|
Pseudomonas aeruginosa
PAO1 |
New gene name: flgZ. New product name: FlgZ. New product name confidence: Class 1. New comment: N_terminal protein sequencing by Edman degradation revealed the amino acid sequence PNPFVEEAGP as the beginning of the FlgZ protein (PMID:30864240). New PMIDs: 27114465, 31474950, 30864240.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PP_4397
|
Pseudomonas putida
KT2440 |
New gene name: flgZ. New product name confidence: Class 1. New PMIDs: 24504373, 20226196, 30111852.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PSF113_4460
|
Pseudomonas fluorescens
F113 |
New product name confidence: Class 1. New PMID: 24504373.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PA14_56790
|
Pseudomonas aeruginosa
UCBPP-PA14 |
New gene name: bifA. New product name: BifA. New product name confidence: Class 1. New PMID: 17586641.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Oct 9, 2019 |
PP_2258
|
Pseudomonas putida
KT2440 |
New product name confidence: Class 1. New PMIDs: 23864570, 30111852.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|