This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas yangmingensis DSM 24213 | GCF_900114825.1 latest |
49 | Scaffold | 2882 (60) | SAMN05216217 | missing | missing | DOE Joint Genome Institute |
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Pseudomonas zanjanensis SWRI12 - Assembly GCF_014268745.2 | GCF_014268745.2 latest |
- | Contig | 5385 (69) | SAMN15248334 | Wheat rhizosphere | Iran: Zanjan | KU Leuven |
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Pseudomonas zarinae SWRI108 - Assembly GCF_014268695.2 | GCF_014268695.2 latest |
- | Complete Genome | 5785 (55) | SAMN15248336 | Wheat rhizosphere | Iran: Kermanshah | KU Leuven |
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Pseudomonas zeae BIM B-582 | GCF_024610595.1 latest |
- | Complete Genome | 5702 (67) | SAMN30090602 | missing | USSR | Institute of Microbiology, National Academy of Sciences of Belarus |
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Pseudomonas zeae OE 48.2 - Assembly GCF_014268485.2 | GCF_014268485.2 latest |
- | Complete Genome | 5818 (53) | SAMN15248348 | Maize rhizosphere | Belgium | KU Leuven |
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Pseudomonas zeshuii 20-MO00624-0 | GCF_015680345.1 latest |
- | Contig | 4925 (137) | SAMN16607303 | fish | Ghana | German Federal Institute for Risk Assessment |
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Pseudomonas zeshuii 89C1 | GCF_013522795.1 latest |
- | Contig | 5130 (128) | SAMN14085457 | USA:Albany | Northwestern University |
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Pseudomonas zeshuii KACC 15471 | GCF_900141925.1 latest |
39 | Scaffold | 4868 (88) | SAMN05216295 | missing | missing | DOE Joint Genome Institute |
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Pseudomonas zhaodongensis NEAU-ST5-21 | GCF_003696365.1 latest |
- | Contig | 4277 (44) | SAMN10266091 | missing | China: Beijing | Institute of Microbiology, Chinese Academy of Sciences |
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Pseudomonas zhaodongensis SST2 | GCF_003293815.1 latest |
- | Contig | 4310 (84) | SAMN09509804 | marine sediment | Antarctica | Kingston University |
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