Pseudomonas zarinae SWRI108

Strain Overview
Organism Name Pseudomonas zarinae SWRI108 - Assembly GCF_014268695.2
Species Pseudomonas zarinae
Strain SWRI108
Description/Title
Annotated Genes 5785
Partial Genes 55
Host Information
Geographic Location
Location Name Iran: Kermanshah
Isolation Source Wheat rhizosphere
Sample Provider
Name Cedric Lood
E-mail cedric.lood@kuleuven.be
Institution KU Leuven
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_014268695.2
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6551245
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN15248336
NCBI Taxonomy ID 2745498
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas zarinae strain SWRI108 chromosome, complete genome

Annotated Features

Feature Count
gene 5785
CDS 5700
pseudo 67
tRNA 65
rRNA 17
ncRNA 3
tmRNA 1

Replicons

Name Length GC
Pseudomonas zarinae strain SWRI108 chromosome, complete genome 6551245 bp 60.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF