| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas zanjanensis SWRI12 - Assembly GCF_014268745.2 |
| Species | Pseudomonas zanjanensis |
| Strain | SWRI12 |
| Description/Title | |
| Annotated Genes | 5385 |
| Partial Genes | 69 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Iran: Zanjan |
| Isolation Source | Wheat rhizosphere |
| Sample Provider | |
|---|---|
| Name | Cedric Lood |
| cedric.lood@kuleuven.be | |
| Institution | KU Leuven |
| Date Collected | 2006 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 18 |
| Contigs | |
| Contig N50 | 3708532 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN15248334 |
| NCBI Taxonomy ID | 2745496 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5385 |
| CDS | 5303 |
| pseudo | 75 |
| tRNA | 64 |
| rRNA | 15 |
| ncRNA | 3 |
| pseudogenic_tRNA | 1 |
| tmRNA | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |