Pseudomonas sp. M1, PM1_RS16040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. M1 - Assembly GCF_000317185.3
GCF_000317185.3|latest |
| Locus Tag |
PM1_RS16040
|
| Name |
Synonym: PM1_0216345 |
| Replicon | PM1contig_002 |
| Genomic location | 3466020 - 3466787 (+ strand) |
Cross-References
| RefSeq | WP_009616257.1 |
| GI | 497302040 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
short-chain dehydrogenase/reductase SDR
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.37 |
| Kyte-Doolittle Hydrophobicity Value | 0.129 |
| Molecular Weight (kDa) | 26.7 |
| Isoelectric Point (pI) | 6.27 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG143707 (1 members) |
| Putative Inparalogs |
1 predicted inparalogs 3-hydroxy-2-methylbutyryl-CoA dehydrogenase (PM1_RS24255) 60.9% identity |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PM1_RS16040
Search term: short-chain dehydrogenase/reductase SDR
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
hydroxysteroid 17-beta dehydrogenase 10 [Source:HGNC Symbol;Acc:HGNC:4800]
E-value:
2.7e-78
Percent Identity:
59.4
|
References
No references are associated with this feature.