Pseudomonas sp. M1

Strain Overview
Organism Name Pseudomonas sp. M1 - Assembly GCF_000317185.3
Species Pseudomonas sp.
Strain M1
Description/Title Sample from Pseudomonas sp. M1
Annotated Genes 6068
Partial Genes 183
Host Information
Geographic Location
Location Name Netherlands: Rhine River
Isolation Source sediment
Sample Provider
Name
E-mail
Institution
Date Collected 1999

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000317185.3
Assembly Status latest
Scaffolds
Contigs 4
Contig N50 4881728
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471891
NCBI Taxonomy ID 95619
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6041
CDS 5959
tRNA 66
pseudo 27
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2827
Cytoplasmic Membrane 1283
Periplasmic 192
Outer Membrane 178
Extracellular 48
Unknown 1286
Unknown (This protein may have multiple localization sites) 145

Replicons

Name Length GC
Pseudomonas sp. M1 PM1contig_001, whole genome shotgun sequence. 210792 bp 65.8%
Replicon details
Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence. 4881728 bp 67.1%
Replicon details
Pseudomonas sp. M1 PM1contig_003, whole genome shotgun sequence. 1660488 bp 68.2%
Replicon details
Pseudomonas sp. M1 PM1contig_004, whole genome shotgun sequence. 229420 bp 67.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF