Pseudomonas sp. M1, PM1_RS16040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 182 | 199 | 2.7E-23 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 135 | 151 | 2.7E-23 |
| Pfam | PF00106 | short chain dehydrogenase | IPR002347 | Short-chain dehydrogenase/reductase SDR | 6 | 202 | 2.4E-44 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 78 | 89 | 3.3E-7 |
| CDD | cd05371 | HSD10-like_SDR_c | - | - | 5 | 254 | 0.0 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 161 | 180 | 2.7E-23 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 141 | 149 | 3.3E-7 |
| FunFam | G3DSA:3.40.50.720:FF:000215 | 3-hydroxyacyl-CoA dehydrogenase type-2 | - | - | 1 | 254 | 9.3E-119 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 78 | 89 | 2.7E-23 |
| PANTHER | PTHR43658 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE | - | - | 3 | 254 | 6.6E-102 |
| Gene3D | G3DSA:3.40.50.720 | - | - | - | 1 | 253 | 1.3E-74 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | IPR036291 | NAD(P)-binding domain superfamily | 4 | 249 | 2.25E-62 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 7 | 24 | 2.7E-23 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | IPR002347 | Short-chain dehydrogenase/reductase SDR | 161 | 180 | 3.3E-7 |
| SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | - | - | 6 | 197 | 1.8E-4 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.