Pseudomonas sp. VLB120, PVLB_05325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_05325
Name
Replicon chromosome
Genomic location 1212405 - 1213733 (- strand)

Cross-References

RefSeq YP_008761999.1
GI 557221784
Entrez 17495651
INSDC AGZ33872.1
NCBI Locus Tag PVLB_05325
UniParc UPI0003C06BEC
UniProtKB Acc U5VAE8
UniProtKB ID U5VAE8_9PSED
UniRef100 UniRef100_U5VAE8
UniRef50 UniRef50_P13632
UniRef90 UniRef90_Q1IE25

Product

Feature Type CDS
Coding Frame 1
Product Name
Fis family two component sigma-54 specific transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -7.96
Kyte-Doolittle Hydrophobicity Value -0.195
Molecular Weight (kDa) 48.6
Isoelectric Point (pI) 5.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 615 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001271 (497 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_05325

Human Homologs

References

No references are associated with this feature.