Pseudomonas sp. VLB120, PVLB_05325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psv02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 5 192 4.98E-43
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 147 376 8.77E-71
Gene3D G3DSA:1.10.10.60 - - - 389 442 5.0E-14
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 6 117 5.1E-30
CDD cd17549 REC_DctD-like - - 8 137 7.60913E-67
Gene3D G3DSA:3.40.50.2300 - - - 6 146 2.6E-33
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 139 317 1.1E-73
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 405 422 1.2E-9
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 399 439 1.5E-10
CDD cd00009 AAA - - 152 311 1.96981E-24
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 422 442 1.2E-9
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 147 313 1.1E-67
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 8 117 4.2E-26
FunFam G3DSA:3.40.50.2300:FF:000018 DNA-binding transcriptional regulator NtrC - - 4 134 5.8E-42
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 358 441 8.51E-12
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 167 314 2.9E-8
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 6 441 0.0
Gene3D G3DSA:1.10.8.60 - - - 318 386 1.1E-22
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 147 317 4.1E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.