| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. VLB120 |
| Species | Pseudomonas sp. |
| Strain | VLB120 |
| Description/Title | Sample from Pseudomonas sp. VLB120 |
| Annotated Genes | 5580 |
| Partial Genes |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Isolation Source | soil |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02603030 |
| NCBI Taxonomy ID | 69328 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas sp. VLB120, complete genome. | |
| Pseudomonas sp. VLB120 plasmid pSTY, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5580 |
| CDS | 5479 |
| tRNA | 79 |
| rRNA | 22 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2419 |
| Cytoplasmic Membrane | 1195 |
| Periplasmic | 159 |
| Outer Membrane | 131 |
| Extracellular | 45 |
| Unknown | 1402 |
| Unknown (This protein may have multiple localization sites) | 128 |
| Flagellar | 17 |
| Fimbrial | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas sp. VLB120, complete genome. | 5644569 bp | 61.8% |
Replicon details
|
| Pseudomonas sp. VLB120 plasmid pSTY, complete sequence. | 321653 bp | 56.8% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |