Pseudomonas sp. CF149, CF149_12174
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACAACCCCAATATCAAGTTCCTGTTTATCTATATTGTGTTGTTCCTGGTGGTGCTGCTGGTGCTGTACATCAAGCACCGTCTGACCCGCATGCCGATTG GCCGCGCCTGGGAAGCGCTGCGCGAAGATGAAATCGCCTGCCGCTCCATGGGCCTGAACCATGTGCTGGTCAAACTTTCGGCGTTCACCATTGGTGCTTC CACGGCGGGTCTGGCCGGGGTGTTCTTCGCCAGCTATCAAGGTTTTGTGAACCCGTCTTCGTTTACCTTCTTTGAGTCGGCCTTGATCCTCGCGATTGTG GTGCTCGGCGGCATGGGCTCAACGGTGGGTGTGGTGATCGCGGCCTTCGTGCTGACCGTGGCTCCTGAACTGCTGCGCAGCTTTGCCGAATACCGGGTGT TGCTGTTTGGTGTCTTGATGGTGTTGATGATGATCTGGCGACCGCGAGGCCTGATCCGGATCAGCCGTGTCGGTGTTACGCCACGCAAGGGAGTCGCGCC
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| DNA Sequence for Gene |
>CF149_12174
ATGAACGAGCCCATTCTGAATAACGACGTTGTGCTTTCGGTCGACAAATTGATGATGCATTTCGGGGGTATCAAGGCCCTGAGCGATGTGAGCCTGAAGG TCAAACGCAACTCGATCTTTGCCCTGATCGGCCCCAACGGTGCCGGTAAAACCACCGTCTTCAACTGCCTGACCGGCTTCTACAAGGCCAGCGGCGGCAA GATCGAGCTCAATGCACGAGGCACTCGCACCAACGTCATCAAGTTGTTGGGCGAGCCCTTCAAACTGGCTGACTTTGTATCGCCCAAGGCGTTCGCCAGC CGTCTGTACTACAAAATGTTCGGTGGTACCCACCTGGTCAACCGCTCAGGCCTGGCCCGCACCTTTCAGAACATTCGTCTGTTCAAGGAAATGTCGGTAC TGGAAAACCTGCTGGTGGCCCAGCACATGTGGGTCAACCGCAACATGCTCGCCGGTATCCTCAACACCAAGGGCTATCGCAAGGCCGAAAGCGATGCGCT GGACCACGCGTTCTACTGGCTGGAGGTGGTCGACCTGGTGGACTGCGCCAACCGCTTGGCCGGTGAATTGTCCTACGGCCAACAGCGGCGTCTGGAGATT GCCCGGGCCATGTGTACCCGTCCGCAAATCATCTGTCTGGACGAACCTGCGGCAGGCCTCAACCCGCAGGAAACCGAAGCGCTGAGCGGGATGATTCGCC TGCTGCGTGATGAACACGACCTGACCGTGGTGCTGATTGAGCACGACATGGGCATGGTCATGAGTATTTCCGATCACATCGTGGTGCTCGACCACGGTAA CGTGATCGCCGAGGGCGGGCCTGAAGCCATCCGTAACGACCCCAAAGTGATTGCTGCCTACCTCGGCGCAGATGAAGAGGAGCTGATATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGCACGATCCTCGAACTCAAGGAGCTGGACGTTCACTACGGGCCGATCCAGGCGTTGAAAAAAGTCTCGATGCACATTGAAGAGGGTGAAACCGTGAG CCTGATCGGCTCCAACGGTGCGGGAAAATCTACGCTGCTGATGTCGATTTTTGGCCAGCCCCGTGCCAGCGGTGGACAAATCATCTACCAGGGCGTGGAC ATTACCCACAAATCCTCGCACTACATCGCCTCCAACGGTATCGCCCAGTCGCCGGAGGGCCGCCGCGTGTTTCCAGACATGTCGGTTGAAGAAAACTTGT TGATGGGCACCATTCCCATTGGCGACAAGCATGCTGACGAGGACATGCAGCGCATGTTCGAGTTGTTCCCAAGGCTCAAGGAGCGGCGTAACCAGAGGGC CATGACCATGTCGGGCGGCGAGCAGCAAATGCTCGCCATCGCCCGCGCACTGATGAGCCGGCCCAAGCTGTTATTGCTGGATGAACCCAGCCTGGGGTTG
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| Amino Acid Sequence |
>high affinity branched-chain amino acid ABC transporter, ATP-binding protein
MNEPILNNDVVLSVDKLMMHFGGIKALSDVSLKVKRNSIFALIGPNGAGKTTVFNCLTGFYKASGGKIELNARGTRTNVIKLLGEPFKLADFVSPKAFAS RLYYKMFGGTHLVNRSGLARTFQNIRLFKEMSVLENLLVAQHMWVNRNMLAGILNTKGYRKAESDALDHAFYWLEVVDLVDCANRLAGELSYGQQRRLEI ARAMCTRPQIICLDEPAAGLNPQETEALSGMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGNVIAEGGPEAIRNDPKVIAAYLGADEEELI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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