Pseudomonas syringae pv. tomato NYS-T1, NB04_RS21230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CCTTGCCGAG-N34-CTCGGCAAGG | 50526 | 50579 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: ATGCGCACACTG-N86-CAGTGTGCGCAT | 50039 | 50148 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CCTTGCCGAG-N34-CTCGGCAAGG | 50526 | 50579 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Palindrome | 48272 | 48291 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 18 | 48037 | 48057 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |