Pseudomonas syringae pv. tomato NYS-T1, NB04_RS21230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato strain NYS-T1 Contig20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCCTGATCGAGCCGTTTCCATGCAACAGGTTGCAGGTTAAAAACACACCGTTGGTGGCTTGCCGCTTGATGCAGGGT GCCGTCCGCTTGTAAACTATCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAGCTGGCAACCGGCGGCAAAGAACCAAAGCTGGCGTGGG AAAACGACAAGCCTACCGTTATGGCTCTGCGCGAAATCGCAGCGGGCCTGATGGATTACGCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAACCATT GTTTGCAGCGTTTGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCGGGTCGACGCAGTACGGCGCAGGGTAAAAGCCATTGGCAGGGGGTAGCGCC
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| DNA Sequence for Gene |
>NB04_RS21230
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCCTACCTCGGCAAGGACCAGGTCAATTTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGATGGCCAGCGCCGTCGCAGCGGTGAAGCCTACGTCACCCATCCTCTTGCGGTGGCCAATATCCTTGCTGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTCATCGAAGACACCGGTATTGCCAAGGAAGCGCTCAGCGCGCAGTTTGGCGAAACCGTCGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAAGCCGAAGCTCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGGGACATCCGCGTGATTC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACACTGGAAGTCCTGTCCGGTGAAAAGCGCCGTCGCATCGCCAAGGAAACCCTCGAAATCTACGC CCCCATCGCCAATCGGCTGGGCATGCACAGTGTGCGCATCGAATTCGAAGACCTGGGTTTCAAGGCCATGTACCCGATGCGCTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAGCTGGTCAACAAGATCGAAGAGTCCCTGAGCCATTGCCTTGCGGTGGATGGCATCGAAGGCGACGTCA GCGGGCGGCAAAAACACCTCTACGGCATCTACAAGAAGATGCGCGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTTTACGCGTTCCGCATCATCGT CGACAAGGTCGATACCTGTTATCGCGTGCTGGGCGCTGTACATAATCTGTACAAGCCGCTGCCCGGCCGATTCAAGGATTACATCGCGATCCCAAAGGCC AACGGCTACCAGTCGTTGCATACCACGCTGTTCGGCATGCACGGCGTACCGATCGAAATCCAGATTCGCACACGCGAAATGGAAGAGATGGCCAATAACG GCATCGCTGCGCACTGGCTGTACAAATCCAGTGATGACGAGCAGCCCAAGGGCACTCACGCCCGCGCCCGGCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGCGCGGGCAACTCCCTGGAGTTCATCGAGAGCGTCAAGATCGACCTGTTCCCGGACGAGGTCTACGTTTTCACGCCCAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCAGTGGATTTTGCCTATGCAGTGCATACCGATGTCGGCAACAGCTGCATTGCCTGTCGCATCAACCGCCGACTGGCGCCAT TGTCCGAGCCGCTGCAGAGCGGCTCCACGGTCGAGATTGTCAGCGCCCCCGGCGCACGTCCGAACCCGGCATGGCTGAACTTCGTCGTCACCGGCAAGGC ACGTACCCATATTCGCCACGCGCTCAAGCTGCAACGCCGCTCCGAGTCGATCAACCTTGGCGAGCGCCTGCTCAACAAGGTGCTTAACGGCTTTGAATGC AGCCTGGACAAGGTCACGCCAGAGCGTATTCAACTGGTGCTGAATGAATATCGGGTCGAGGTGCTGGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCCTATGTCGTCGCCCGCCGCTTGCTGGGTGAAGGCGAGCAGCTGCCAAGCCCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGTCTGGTACT CAGCTACGCCAAATGCTGTACGCCGATCCCGGGCGACCCGATTGTCGGCCATTTGTCTGCGGGCAAGGGCATGGTCGTGCACCTGGATAACTGCCGTAAT ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTGTCCTGGGCCAAGGACGTCACCGGCGAATTCAATGTCGAGCTGCGTGTCGAGCTAGAGC ACCAGCGCGGTCTGATCGCCTTGCTGGCCAGCAGTGTCAACGCAGCCGATGGCAATATCGAAAAAATCAGTATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGTGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCTTGACCGGTGTCACACGCATCACCCGGATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAATCCAATCATCAGGAGTTCTTCATGACCAAGACTGTCATCACCAGCGACAAAGCCCCTGCGGCTATCGGCCCGTATTCCCAGGCGATCAAAGCTGGC AACACCGTCTACATGTCCGGACAGATCCCGCTGGACCCGAGCACCATGGAGCTGGTTGAAGGTATCGAAGCCCAGATCACTCAGGTTTTCGAAAACCTGA AGTCGGTTGCGCAAGCCGCGGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTTCTGACCGACCTGGGTCACTTCGCCAAGGTCAACGAGATCAT GGGCACCTATTTCTCGCAGCCGTACCCGGCGCGTGCGGCCATTGGCGTTGCGGCATTGCCGCGTGGCGCGCAGGTTGAAATGGACGCGATTCTCGTCATC GAATAAATCCCCGACGGAGCGTGTTTCGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGTTCCGCGCTCGTCATTTCGCTGCTCGCCGTCATTT
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| Amino Acid Sequence |
>guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC SLDKVTPERIQLVLNEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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