Pseudomonas syringae pv. tomato DC3000, PSPTO_0304
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GATCATGGCCCAGTACCGCAAGCTGGTCATCGCGCCACTGGTTACCCAGGAGCTGGCCAAGGCCGACGAGTCAGTGCGTCATCAGTTCCGCCGCGCCAAA AGGCTGCTGTCACGCGAGACCAGTCTGCTCGATGACAAGCACCATCTGCGCATCCAGACCATGCTCGAGCACAGCCACGCGCTGAAGGTGATTTATGAAA AGCGCCTGGCCTTGCAGCAGATCTGGGTCAAGACCAGCAGCAACGGTCATGACATGCTTTCAGCCATGAAAGAGTGGATTCACGAGGCCGAAGCCAGCGG CATTCAGTCATTGCGCGAGTTCGCCGATCAACTGAAAACCTACTCGTTACGCCCTGTCCACGCCTGATACCGTTGATCGGCGCGCCTCTGGTGGGCGCGC CCGTTCCGGAACTTCCCCCCGTTCAACCTATCTCATCAACTTTCCCGGGCTCTTTGGGAAGGTGTGTGGCGCTGGCCGCAATCGCTTGAGATGCGCTCTT
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| DNA Sequence for Gene |
>PSPTO_0304
ATGGAAAAGCAGTCCCCTACCGCCCTACCCGGCACGCCGATCACTGATATGCCTGCAGCCGCAGAAACCCTGTTAGCCCTGATGCACGCCCAGGCAGAAG TCGCACGCCTGAGCGAGCGCGAACAATTGTTCAGCTCGTTGCTGGTGAGTGTGAACGCGGTTCTGTGGGCGTTCGACTGGGAAACCCAGCGCATGATCTA CGTCAGCCCGGCTTACGAGCACATTTTCGGTCGCTCGGCCGGGCTGCTGCTGGCTGACTACAGCGAGTGGCGCGACAGCATCTACCCCGACGACCTGAAT TACGCCGAGCGCAGCTTGAGCGAAGTCATCGAGAAAGGCGCTGTCGAGGACCGCGAGTACCGCATCATTCGCGCCGACGGCGAAGTGCGCTGGCTCAGTG ACAAATGCTTCGTCAGCCACCGCGCCGACGCCAGTCAGCGCCTGATTGTGGTGGGCATTGCCGAAGACATCACCGACAAAAAGCACCTCGAAGATGAGCT GCAGCGCCTGGCCACGACCGACGTACTGACCCAAAGCAGCAACCGCCGGCACTTTTTCGAGTGCGCCCAGCGCGAGTTCGAACTGGCTCGCCTCAACGGC ACGCCGCTGGCCTTCCTGTTGCTGGACATCGATGACTTCAAACTGGTGAACGACACCTACGGCCACCAGGAAGGCGACACCGTGCTGCAACGCATCGCAG AAAGCGGCCGCTCGGCATTGCGGCGTGGCGATCTGTTCGGCCGGATCGGCGGCGAGGAGTTTGCAGCGGTGTTTCCTGGCTGCGCACCGGAGATGGCCAT GCAGATCGCCGAACGCTTGCAACGCGAGATCCAGCGCCAGAACTTCCAGGCAAATGGCAGCACCTTCAGCATCACCGCCAGCCAGGGCCTGACCAATCTT GGCCCAGAAGACCAAGGCCTGGAAGCCCTCTACGGCCGCGCCGATGCAGCGATGTATCAGGCCAAGCGCCAGGGCAAGAATCAGATTGTGCTGGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCACCTTAAGTAACCTCAACTACCGTGCGACGCTGGAGCGTGCGGAACGATAACCTCAACTACCGAGTTATCGTGCGACGCTCCGCGTCGCATGCCGCC CTGGACGCTCTGCGTCCGATCTTGAATAGGCGGCGCAGCTGAGCTTTTGACGCAGAGCGTCAGGATGATGTTCGCCTGTGGGAGCAAGCTTGCTCGCGAA GGGGTTTGGCCACGCTCTTATTTCTTCGTCACACCCTGAACCGCATCGCCCGGGTCCTCAAGCGCCGCGGGCTCTTGAATAGGTGCCTCAGGCGTAAGGT CCAGCAAGTCATGCTCATCTTCCTCAACTGCATCGGCAACGGCCTCAGGCTCGACCGGCAGCGGTATCAGCAGGCTCGGATCCGTCACGCCGGTGAGTTT CTTGCGCAGACGCTGCAAGTCGCCAACGCTTAGCTTCAACAGCTTCGCCGACTTAGTCTTGATCAACGGGGTAACACTCTCTTCCTCGCCCAGACGCGCC
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| Amino Acid Sequence |
>sensory box/GGDEF domain protein
MEKQSPTALPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWAFDWETQRMIYVSPAYEHIFGRSAGLLLADYSEWRDSIYPDDLN YAERSLSEVIEKGAVEDREYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDITDKKHLEDELQRLATTDVLTQSSNRRHFFECAQREFELARLNG TPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPEMAMQIAERLQREIQRQNFQANGSTFSITASQGLTNL GPEDQGLEALYGRADAAMYQAKRQGKNQIVLV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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