Pseudomonas syringae pv. tomato DC3000, PSPTO_0304

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 167 330 1.2E-44
CDD cd00130 PAS IPR000014 PAS domain 64 157 7.11039E-8
SMART SM00086 pac_2 IPR001610 PAC motif 117 160 0.0023
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 171 328 7.5E-42
Gene3D G3DSA:3.30.450.20 PAS domain - - 50 164 2.4E-25
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 166 331 9.6E-48
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 39 167 1.3E-12
SMART SM00267 duf1_3 IPR000160 GGDEF domain 160 332 3.3E-49
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 176 331 2.59E-46
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 165 332 1.9E-55
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 52 159 1.45E-19
CDD cd01949 GGDEF IPR000160 GGDEF domain 172 330 4.13515E-60
Pfam PF08447 PAS fold IPR013655 PAS fold-3 66 154 4.5E-20
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 34 330 3.8E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.