Pseudomonas syringae pv. tomato DC3000, PSPTO_0304

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0304
NCBI Old Locus Tag	PSPTO0304
Name	Synonym: PSPTO0304
Replicon	chromosome
Genomic location	330437 - 331435 (- strand)

Cross-References

RefSeq	NP_790154.1
GI	28867535
Entrez	1181913
INSDC	AAO53849.1
NCBI Locus Tag	PSPTO_0304
NCBI Old Locus Tag	PSPTO0304
UniParc	UPI00000083AD
UniProtKB Acc	Q88AT2
UniProtKB ID	Q88AT2_PSESM
UniRef100	UniRef100_Q88AT2
UniRef50	UniRef50_I7B5R5
UniRef90	UniRef90_Q88AT2

Product

Feature Type	CDS
Coding Frame	1
Product Name	sensory box/GGDEF domain protein
Synonyms
Evidence for Translation
Charge (pH 7)	-14.63
Kyte-Doolittle Hydrophobicity Value	-0.324
Molecular Weight (kDa)	37.3
Isoelectric Point (pI)	4.63

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000287 (512 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0304 Search term: sensory box/GGDEF domain protein

Human Homologs

References