Pseudomonas sp. VLB120, PVLB_22380

Gene Feature Overview

Strain	Pseudomonas sp. VLB120 GCF_000494915.1|latest
Locus Tag	PVLB_22380
Name
Replicon	chromosome
Genomic location	4935275 - 4936624 (- strand)

Cross-References

RefSeq	YP_008765382.1
GI	557225167
Entrez	17499099
INSDC	AGZ37255.1
NCBI Locus Tag	PVLB_22380
UniParc	UPI0003C06F61
UniProtKB Acc	U5VNA9
UniProtKB ID	U5VNA9_9PSED
UniRef100	UniRef100_U5VNA9
UniRef50	UniRef50_P37773
UniRef90	UniRef90_B1J158

Product

Feature Type	CDS
Coding Frame	1
Product Name	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
Synonyms
Evidence for Translation
Charge (pH 7)	-5.51
Kyte-Doolittle Hydrophobicity Value	0.025
Molecular Weight (kDa)	48.1
Isoelectric Point (pI)	6.47

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 578 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001663 (497 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PVLB_22380 Search term: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase

Human Homologs

References