Pseudomonas sp. VLB120, PVLB_22380

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01225
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08245
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016881 acid-amino acid ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01225
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071555 cell wall organization
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01081
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009252 peptidoglycan biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01081
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc anhydromuropeptides recycling II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53623 MurD-like peptide ligases, catalytic domain IPR036565 Mur-like, catalytic domain superfamily 94 309 2.22E-51
Pfam PF01225 Mur ligase family, catalytic domain IPR000713 Mur ligase, N-terminal catalytic domain 2 100 1.4E-22
PANTHER PTHR43445 UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED - - 2 448 7.2E-111
Pfam PF02875 Mur ligase family, glutamate ligase domain IPR004101 Mur ligase, C-terminal 311 359 5.0E-10
SUPERFAMILY SSF51984 MurCD N-terminal domain - - 1 90 6.41E-24
Gene3D G3DSA:3.40.50.720 - - - 1 90 7.6E-35
Gene3D G3DSA:3.40.1190.10 - IPR036565 Mur-like, catalytic domain superfamily 91 313 1.3E-69
Pfam PF08245 Mur ligase middle domain IPR013221 Mur ligase, central 108 291 9.8E-21
FunFam G3DSA:3.40.50.720:FF:000161 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase - - 1 90 1.8E-56
Gene3D G3DSA:3.90.190.20 - IPR036615 Mur ligase, C-terminal domain superfamily 314 449 5.1E-40
SUPERFAMILY SSF53244 MurD-like peptide ligases, peptide-binding domain IPR036615 Mur ligase, C-terminal domain superfamily 311 448 6.41E-37
NCBIfam TIGR01081 JCVI: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase IPR005757 Murein peptide ligase 2 449 0.0
Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. IPR005757 Murein peptide ligase 1 449 60.503849

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.