Pseudomonas sp. VLB120, PVLB_21535

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_21535
Name
Replicon chromosome
Genomic location 4742715 - 4743665 (+ strand)

Cross-References

RefSeq YP_008765213.1
GI 557224998
Entrez 17498920
INSDC AGZ37086.1
NCBI Locus Tag PVLB_21535
UniParc UPI0003C093BD
UniProtKB Acc U5VN39
UniProtKB ID U5VN39_9PSED
UniRef100 UniRef100_U5VN39
UniRef50 UniRef50_Q88PZ5
UniRef90 UniRef90_U5VN39

Product

Feature Type CDS
Coding Frame 1
Product Name
anti-FecI sigma factor FecR
Synonyms
Evidence for Translation
Charge (pH 7) 4.86
Kyte-Doolittle Hydrophobicity Value -0.251
Molecular Weight (kDa) 34.9
Isoelectric Point (pI) 9.08

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 104 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000462 (1708 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_21535

Human Homologs

References

No references are associated with this feature.