Pseudomonas sp. VLB120, PVLB_21535

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. VLB120, complete genome. [Details]
DNA Sequence Upstream of Gene
GCAGATGAACGACACGCTCAAGCCTACCGAGGTCGCGCTGCTCTATCAGTCGCACCATGCCTGGCTTCGCGGTTGGTTGCGCAGCCGGGTCGGTTGCCAC GAACACGCCGCCGACCTGGCTCAGGACACCTTCGTGCGCCTGCTGCGTGCGCGCCAGGTTTCACCGCTCAAAGAACCCCGCGCCTACCTCAGCAGTATCG CCCGGGGCCTGATGATCGACCAGTTCCGACGCCGGGCATTGGAACGGGCCTACCTGGAAAGCCTGGCCACCCTGCCAGAGGCGGAAATACCCAGCGAAGA GCACCGGCTGGTCATCCTCGACACCCTCGAACGCCTCGACCGCGCTCTGCAGCAGCTCAAGCCCAGGGCGCGCCAGGCCTTCCTGTTGGCCCAGCTCGAT GGCCTGAGCATTGCCCAGATCGCCCTGCGCCTGGACGTATCGCGTGCCACCGTCGAACGCGACCTGGCCAAGGCCCTGGGCGTTTGCTACCGGTTACGCT
DNA Sequence for Gene
>PVLB_21535
ATGCCGACCTCTGACAGCACCCCGAATCAAGCCCAGGTCGACCAGGCCATCGACTGGCTGGTGCGTCTGCGCTTCGACACCCCCTCCCCGCGCACCCGGC AACGGTTCCAGCAGTGGTTGGCCAGCCATCCGCACAACGCCCATGCCTGGGAACGCGTCAGCCACCTCAGCGATGAACTGGCCGGGCTCCCCAGCGAACT GAGCCGCCGTACCCTGGAGGGCAGCCAGCGCATCAGCCGGCGCGACCACCTCAAGCTGCTGGCCGTTCTGGCGGTCGGTAGCAGCCTGGGCTGGGCCGCG CGCGAGCCCCTGGGCTTGCCGGCGCTGTTGGCCGACACCCACACCAGCACGGGCGAACGCCGTCAACTGCTGGGTAGCGATGGCAGCCGTATCCAGCTCA ACACCGCCAGCGCCATCGACCTGCGCTACAGCGACACGCAGCGAGAACTGAAGCTGGTGCATGGTGAAGTCAGCCTGGCCTGCAACGCCAACGACAACCG TCCGTTCCTCCTCGGCACGCGGATCGGCGCCTTATCCACCCGCGACGGGCACTTGCTGCTGCGGGAGAACGACCAAGGTGTATTGCTCGCCGTGCGCAGC GGCGAAGTGACGATGTTCCCCGATTCGAGCGCACCACGCCGGGTGCAGCCCGGCGAAGTGCTTCAGGTTGCTTCGGCGGCTAGCTACGCGCCGGCCACCC TGTATGCCGATCCGTGGGGCTGGACCGATGGCGTGCTGAGCGTGCAGCAGATGCCGCTTGGCGAGTTCGTCGCCGAACTGTCGCGCTATCGCCCTGGCTT GCTGCGCTGTGCGCCTGAGGTGGCGGGCCTGAAAGTGTCCGGCACCTATCAGTTGGCGGACACCGAGCGAATCCTGCTGCTACTGGCGCGCAGCCTGCCT GTGCGCGTCGTTTACCGCACGCGTTACTGGGTCAGCATCGGCGCCGTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAAAACTCAAAAAATAATGAGGTGGAATCTCATTCTCGTCCGGCCTGAAGGAACAAAAGCCCCAACAGTGGTCTGTGAAACCTTCAGGAGCCGTCCATGA TTCACCCGTGTTCCCCTCGTAACGACAGGTTGCGCCATGCCGTGCGCGCCGCGGTGTTCGGCCTTGGCCTGGGCGCTGGCCTGGCCGCTTCGGTGACGGC ATTGGCTGCACCGGCCAGCCAGCGCCAACAACTGGACTGGCGCATCGCGGCGGGGCCATTGGCACCGGCACTGGACCAACTGGCGCGCCAAGGCGGCCTG AACCTGTCGTTCGATGCGAACAGCCTGCAGGGAAAGACCACCCAAGGGGTGCAAGGCCGTCATGACGCCGCCCAAGCCCTGTCGATCCTGTTGCAGGGCA GCGATGTGCAAGTGCAGCAGGAAGGCGACAACAGTTTCCTGCTGATCCCGGCCATGGACGTGGGCGACGCGCTGGAGCTCGGTGCCACCAGCATTTCCAG
Amino Acid Sequence
>anti-FecI sigma factor FecR
MPTSDSTPNQAQVDQAIDWLVRLRFDTPSPRTRQRFQQWLASHPHNAHAWERVSHLSDELAGLPSELSRRTLEGSQRISRRDHLKLLAVLAVGSSLGWAA REPLGLPALLADTHTSTGERRQLLGSDGSRIQLNTASAIDLRYSDTQRELKLVHGEVSLACNANDNRPFLLGTRIGALSTRDGHLLLRENDQGVLLAVRS GEVTMFPDSSAPRRVQPGEVLQVASAASYAPATLYADPWGWTDGVLSVQQMPLGEFVAELSRYRPGLLRCAPEVAGLKVSGTYQLADTERILLLLARSLP VRVVYRTRYWVSIGAV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site