Pseudomonas sp. VLB120, PVLB_11795

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_11795
Name
Replicon chromosome
Genomic location 2592263 - 2595442 (- strand)

Cross-References

RefSeq YP_008763274.1
GI 557223059
Entrez 17496963
INSDC AGZ35147.1
NCBI Locus Tag PVLB_11795
UniParc UPI0003C06DC7
UniProtKB Acc U5VE72
UniProtKB ID U5VE72_9PSED
UniRef100 UniRef100_U5VE72
UniRef50 UniRef50_Q8EBL9
UniRef90 UniRef90_Q1IB42

Product

Feature Type CDS
Coding Frame 1
Product Name
hydrophobe/amphiphile efflux-1 (HAE1) family protein
Synonyms
Evidence for Translation
Charge (pH 7) -7.43
Kyte-Doolittle Hydrophobicity Value 0.328
Molecular Weight (kDa) 114.7
Isoelectric Point (pI) 5.90

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1345.5 67.14 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 488 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_11795

Human Homologs

References

No references are associated with this feature.