Pseudomonas aeruginosa PAO1, PA2850 (ohr)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| TTAT-Box | 3203858 | 3203882 | + |
|
11133975 | Details |
| -35 region | 3203907 | 3203912 | + |
|
11133975 | Details |
| -10 region | 3203930 | 3203935 | + |
|
11133975 | Details |
| transcriptional initiation site (+1) | 3203941 | 3203941 | + |
|
11133975 | Details |
| ohr promoter | 3203897 | 3203946 | + |
|
11133975 | Details |
| ohr promoter region | 3203859 | 3203941 | + |
|
11133975 | Details |
| transcription initiation site | 3203940 | 3203940 | + |
|
20139188 | Details |
| OhrR binding site | 3203939 | 3203949 | + |
ECO:0000314
direct assay evidence used in manual assertion |
20139188 | Details |
| OhrR binding site | 3203959 | 3203969 | + |
ECO:0000314
direct assay evidence used in manual assertion |
20139188 | Details |
| Shine-Dalgarno sequence | 3203987 | 3203989 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGGCGGCTTCG-N43-CGAAGCCGCCG | 3204273 | 3204337 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GAAAAAGCCCGGC-N4-GCCGGGCTTTTTC | 3204468 | 3204497 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 692 | 3204467 | 3204498 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 693 | 3204468 | 3204497 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 694 | 3204474 | 3204491 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 695 | 3204474 | 3204491 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |