This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 282 | GCF_002312115.1 latest |
34 | Contig | 5980 (75) | SAMN06547050 | sputum | Canada: Montreal | Universite Laval |
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Pseudomonas aeruginosa 2856 | GCF_028403965.1 latest |
- | Complete Genome | 6579 (66) | SAMN32874240 | missing | tracheal aspirate | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2857 | GCF_028404045.1 latest |
- | Complete Genome | 6653 (62) | SAMN32874241 | missing | sputum | France | 111 (paeruginosa) | Technical university of Denmark |
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Pseudomonas aeruginosa 2858 | GCF_028404005.1 latest |
- | Complete Genome | 6447 (67) | SAMN32874242 | missing | urine | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2866 | GCF_028404065.1 latest |
- | Complete Genome | 6537 (66) | SAMN32874243 | missing | Catheter | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2867 | GCF_028403985.1 latest |
- | Complete Genome | 6559 (66) | SAMN32874244 | missing | bone | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2868 | GCF_028404085.1 latest |
- | Complete Genome | 6793 (68) | SAMN32874245 | missing | tracheal aspirate | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 286S270711BSL_PA1 | GCF_004374705.1 latest |
- | Contig | 6496 (176) | SAMN10478170 | human | cystic fibrosis | sputum | Canada: Montreal | 245 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 2872 | GCF_028404125.1 latest |
- | Chromosome | 6638 (60) | SAMN32874246 | missing | Stools | France | 111 (paeruginosa) | Technical university of Denmark |
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Pseudomonas aeruginosa 2875 | GCF_028551535.1 latest |
- | Chromosome | 6928 (74) | SAMN32874247 | missing | Rectal screening | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2879 | GCF_028367665.1 latest |
- | Contig | 6793 (108) | SAMN32874248 | missing | urine | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 2880 | GCF_028404025.1 latest |
- | Complete Genome | 6637 (66) | SAMN32874249 | missing | sputum | France | 111 (paeruginosa) | Technical university of Denmark |
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Pseudomonas aeruginosa 2881 | GCF_028404105.1 latest |
- | Complete Genome | 6716 (66) | SAMN32874250 | missing | urine | France | 111 (paeruginosa) | Technical university of Denmark |
Strain Details
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Pseudomonas aeruginosa 29 | GCF_004351105.1 latest |
- | Scaffold | 5995 (2407) | SAMN10743682 | infection | hospital | Italy: Trento | University of Trento |
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Pseudomonas aeruginosa 293S080611BSL_PA1 | GCF_004374685.1 latest |
- | Contig | 5849 (83) | SAMN10478171 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 293S080611BSL_PA2 | GCF_004374405.1 latest |
- | Scaffold | 5941 (114) | SAMN10478172 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 294-4 | GCF_030326375.1 latest |
- | Contig | 6386 (32) | SAMN15324865 | intestine | China | 1710 (paeruginosa) | City University of Hong Kong |
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Pseudomonas aeruginosa 295s071211BSL_PA1 | GCF_004374415.1 latest |
- | Scaffold | 5932 (124) | SAMN10478173 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
Strain Details
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Pseudomonas aeruginosa 295s071211BSL_PA2 | GCF_004374365.1 latest |
- | Contig | 6515 (86) | SAMN10478174 | human | cystic fibrosis | sputum | Canada: Montreal | 17 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 297 | GCF_002312755.1 latest |
62 | Contig | 6228 (126) | SAMN06547019 | infected lung | Canada: Saint-Pie-de-Bagot | 853 (paeruginosa) | Universite Laval |
Strain Details
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