This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 1707 | GCF_024520235.1 latest |
- | Scaffold | 6485 (179) | SAMN27177303 | China:Zhejiang | 360 (paeruginosa) | Soochow University |
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Pseudomonas aeruginosa 17073326 | GCF_024542815.1 latest |
- | Contig | 6005 (143) | SAMN16967660 | sputum | China: Wuliangsuhai, Inner Mongolia | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 17082202-2 | GCF_023756785.1 latest |
- | Contig | 5831 (79) | SAMN28952259 | bile | China | 274 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 1709-12 | GCF_001756495.1 latest |
55 | Contig | 6539 (117) | SAMN04029215 | not collected | Belgium | 111 (paeruginosa) | Technical University of Denmark |
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Pseudomonas aeruginosa 171 | GCF_004349875.1 latest |
- | Scaffold | 5925 (224) | SAMN10743811 | infection | hospital | Italy: Trento | 291 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 17122103 | GCF_023756855.1 latest |
- | Contig | 5857 (78) | SAMN28952160 | bile | China | 274 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 17122116 | GCF_023756795.1 latest |
- | Contig | 5812 (80) | SAMN28952165 | bile | China | 274 (paeruginosa) | Institute of Military Veterinary Science, the Academy of Military Medical Sciences |
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Pseudomonas aeruginosa 1713 | GCF_003863425.1 latest |
- | Contig | 6335 (265) | SAMN10484683 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | University of Aberdeen |
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Pseudomonas aeruginosa 1714 | GCF_003863685.1 latest |
- | Contig | 5803 (219) | SAMN10484684 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | 242 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 172 | GCF_004350385.1 latest |
- | Contig | 6397 (204) | SAMN10743812 | infection | hospital | Italy: Trento | 309 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 172BR | GCF_003834225.1 latest |
- | Contig | 6523 (110) | SAMN07424213 | Brazil | University Laval |
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Pseudomonas aeruginosa 173 - Assembly GCF_002312055.1 | GCF_002312055.1 latest |
52 | Contig | 6092 (123) | SAMN06547055 | sputum | Canada: Montreal | 633 (paeruginosa) | Universite Laval |
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Pseudomonas aeruginosa 173 - Assembly GCF_004349845.1 | GCF_004349845.1 latest |
- | Scaffold | 6014 (164) | SAMN10743813 | infection | hospital | Italy: Trento | 291 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 17376 | GCF_023554655.1 latest |
- | Scaffold | 6791 (330) | SAMN28552162 | Peru | 111 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 17387 | GCF_021491515.1 latest |
- | Scaffold | 6773 (370) | SAMN24725762 | Peru | 179 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 17392 | GCF_023556375.1 latest |
- | Scaffold | 6521 (575) | SAMN28552163 | Peru | Cepheid |
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Pseudomonas aeruginosa 174 | GCF_004349825.1 latest |
- | Contig | 6266 (139) | SAMN10743814 | infection | hospital | Italy: Trento | 514 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 17404 | GCF_021491395.1 latest |
- | Scaffold | 6264 (281) | SAMN24725746 | Peru | 357 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 17408 | GCF_023554055.1 latest |
- | Scaffold | 6639 (339) | SAMN28552164 | Peru | 260 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 17424 | GCF_030509205.1 latest |
- | Scaffold | 5904 (400) | SAMN35539649 | USA | 274 (paeruginosa) | Cepheid |
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