Pseudomonas aeruginosa 1709-12

Strain Overview
Organism Name Pseudomonas aeruginosa 1709-12
Species Pseudomonas aeruginosa
Strain 1709-12
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6539
Partial Genes 117
Host Information
Host Species Taxonomic Name not collected
Geographic Location
Location Name Belgium
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected 2004

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 111
trpE
3		 guaA
5		 mutL
4		 aroE
5		 acsA
17		 ppsA
4		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001756495.1
Assembly Status latest
Scaffolds
Contigs 55
Contig N50 288354
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04029215
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6539
CDS 6466
pseudo 131
tRNA 60
rRNA 8
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2893
Unknown 1601
Cytoplasmic Membrane 1416
Periplasmic 181
Outer Membrane 160
Unknown (This protein may have multiple localization sites) 153
Extracellular 71
Flagellar 17
Fimbrial 8
Outer Membrane Vesicle 7
T3SS 4

Replicons

55 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF