| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 17392 |
| Species | Pseudomonas aeruginosa |
| Strain | 17392 |
| Description/Title | |
| Annotated Genes | 6521 |
| Partial Genes | 575 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Peru |
| Sample Provider | |
|---|---|
| Name | Isabella Tickler |
| isabella.tickler@cepheid.com | |
| Institution | Cepheid |
| Date Collected | 2021 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 419 |
| Contigs | |
| Contig N50 | 81493 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN28552163 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6521 |
| CDS | 6454 |
| pseudo | 275 |
| tRNA | 61 |
| ncRNA | 3 |
| rRNA | 3 |
| pseudogenic_tRNA | 1 |
| tmRNA | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |