This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 160 - Assembly GCF_013115355.1 | GCF_013115355.1 latest |
- | Contig | 6107 (237) | SAMN14833402 | bronchoalveolar lavage | United Kingdom: Newcastle | 1567 (paeruginosa) | bioMerieux |
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Pseudomonas aeruginosa 1600 | GCF_003863635.1 latest |
- | Contig | 5933 (87) | SAMN10484667 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Royal Infirmary, Edinburgh | 132 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 16014 | GCF_017581745.1 latest |
- | Scaffold | 5940 (143) | SAMN17860446 | stool | Nigeria | 244 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 16018 | GCF_017582385.1 latest |
- | Contig | 6618 (246) | SAMN17860447 | urine | Nigeria | 654 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 16048 | GCF_017582255.1 latest |
- | Scaffold | 5953 (188) | SAMN17860455 | sputum | Nigeria | Cepheid |
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Pseudomonas aeruginosa 1608 | GCF_003863605.1 latest |
- | Contig | 5764 (222) | SAMN10484668 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Aberdeen Royal Infirmary | University of Aberdeen |
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Pseudomonas aeruginosa 1617 | GCF_003863815.1 latest |
- | Contig | 6358 (423) | SAMN10484669 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Aberdeen Royal Infirmary | 2010 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 1618 | GCF_003863585.1 latest |
- | Contig | 6488 (225) | SAMN10484670 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Aberdeen Royal Infirmary | 2010 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 1619 | GCF_003863785.1 latest |
- | Contig | 6414 (278) | SAMN10484671 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Aberdeen Royal Infirmary | 2010 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 162 | GCF_004349915.1 latest |
- | Contig | 6302 (175) | SAMN10743804 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 1622 | GCF_003863575.1 latest |
- | Contig | 5768 (96) | SAMN10484672 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Aberdeen Royal Infirmary | University of Aberdeen |
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Pseudomonas aeruginosa 163 | GCF_004350435.1 latest |
- | Contig | 5935 (118) | SAMN10743805 | infection | hospital | Italy: Trento | 2615 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 1631 | GCF_003863775.1 latest |
- | Contig | 5845 (137) | SAMN10484673 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Royal Infirmary, Edinburgh | University of Aberdeen |
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Pseudomonas aeruginosa 163603 | GCF_013284915.1 latest |
- | Scaffold | 6443 (137) | SAMN15010103 | unknown | urine | France: Levallois | 233 (paeruginosa) | University Hospital of Besancon |
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Pseudomonas aeruginosa 1638 | GCF_003863555.1 latest |
- | Contig | 5786 (121) | SAMN10484674 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Western General, Edinburgh | 379 (paeruginosa) | University of Aberdeen |
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Pseudomonas aeruginosa 163915 | GCF_013284955.1 latest |
- | Scaffold | 6304 (128) | SAMN15010104 | unknown | urine | France: Charenton le Pont | 233 (paeruginosa) | University Hospital of Besancon |
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Pseudomonas aeruginosa 163940 | GCF_003721395.1 latest |
- | Scaffold | 5836 (131) | SAMN10236518 | Rectal | France: Paris | 549 (paeruginosa) | University Hospital of Besancon |
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Pseudomonas aeruginosa 164-1 | GCF_030326405.1 latest |
- | Scaffold | 6594 (131) | SAMN15324863 | intestine | China | 313 (paeruginosa) | City University of Hong Kong |
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Pseudomonas aeruginosa 164130 | GCF_008244545.1 latest |
- | Scaffold | 6465 (246) | SAMN12640896 | Unknown | urine | France:Wissous | 235 (paeruginosa) | University Hospital of Besancon |
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Pseudomonas aeruginosa 165 | GCF_004349905.1 latest |
- | Contig | 6610 (387) | SAMN10743806 | infection | hospital | Italy: Trento | University of Trento |
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