This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.

By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.

Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).

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14230 strains returned

= Popular strains (Ordered by popular strains first, then by strain name, ascending)
Strain Assembly Contigs Assembly Level Genes (partial) BioSample Accession Host Organism Host Disease Isolation Source Location MLST Institution
Pseudomonas aeruginosa 160 - Assembly GCF_013115355.1 GCF_013115355.1
latest
- Contig 6107 (237) SAMN14833402 bronchoalveolar lavage United Kingdom: Newcastle 1567 (paeruginosa) bioMerieux
Strain Details
Pseudomonas aeruginosa 1600 GCF_003863635.1
latest
- Contig 5933 (87) SAMN10484667 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Royal Infirmary, Edinburgh 132 (paeruginosa) University of Aberdeen
Strain Details
Pseudomonas aeruginosa 16014 GCF_017581745.1
latest
- Scaffold 5940 (143) SAMN17860446 stool Nigeria 244 (paeruginosa) Cepheid
Strain Details
Pseudomonas aeruginosa 16018 GCF_017582385.1
latest
- Contig 6618 (246) SAMN17860447 urine Nigeria 654 (paeruginosa) Cepheid
Strain Details
Pseudomonas aeruginosa 16048 GCF_017582255.1
latest
- Scaffold 5953 (188) SAMN17860455 sputum Nigeria Cepheid
Strain Details
Pseudomonas aeruginosa 1608 GCF_003863605.1
latest
- Contig 5764 (222) SAMN10484668 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Aberdeen Royal Infirmary University of Aberdeen
Strain Details
Pseudomonas aeruginosa 1617 GCF_003863815.1
latest
- Contig 6358 (423) SAMN10484669 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Aberdeen Royal Infirmary 2010 (paeruginosa) University of Aberdeen
Strain Details
Pseudomonas aeruginosa 1618 GCF_003863585.1
latest
- Contig 6488 (225) SAMN10484670 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Aberdeen Royal Infirmary 2010 (paeruginosa) University of Aberdeen
Strain Details
Pseudomonas aeruginosa 1619 GCF_003863785.1
latest
- Contig 6414 (278) SAMN10484671 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Aberdeen Royal Infirmary 2010 (paeruginosa) University of Aberdeen
Strain Details
Pseudomonas aeruginosa 162 GCF_004349915.1
latest
- Contig 6302 (175) SAMN10743804 infection hospital Italy: Trento 235 (paeruginosa) University of Trento
Strain Details
Pseudomonas aeruginosa 1622 GCF_003863575.1
latest
- Contig 5768 (96) SAMN10484672 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Aberdeen Royal Infirmary University of Aberdeen
Strain Details
Pseudomonas aeruginosa 163 GCF_004350435.1
latest
- Contig 5935 (118) SAMN10743805 infection hospital Italy: Trento 2615 (paeruginosa) University of Trento
Strain Details
Pseudomonas aeruginosa 1631 GCF_003863775.1
latest
- Contig 5845 (137) SAMN10484673 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Royal Infirmary, Edinburgh University of Aberdeen
Strain Details
Pseudomonas aeruginosa 163603 GCF_013284915.1
latest
- Scaffold 6443 (137) SAMN15010103 unknown urine France: Levallois 233 (paeruginosa) University Hospital of Besancon
Strain Details
Pseudomonas aeruginosa 1638 GCF_003863555.1
latest
- Contig 5786 (121) SAMN10484674 human cystic fibrosis cystic fibrosis patient United Kingdom: Scotland, Western General, Edinburgh 379 (paeruginosa) University of Aberdeen
Strain Details
Pseudomonas aeruginosa 163915 GCF_013284955.1
latest
- Scaffold 6304 (128) SAMN15010104 unknown urine France: Charenton le Pont 233 (paeruginosa) University Hospital of Besancon
Strain Details
Pseudomonas aeruginosa 163940 GCF_003721395.1
latest
- Scaffold 5836 (131) SAMN10236518 Rectal France: Paris 549 (paeruginosa) University Hospital of Besancon
Strain Details
Pseudomonas aeruginosa 164-1 GCF_030326405.1
latest
- Scaffold 6594 (131) SAMN15324863 intestine China 313 (paeruginosa) City University of Hong Kong
Strain Details
Pseudomonas aeruginosa 164130 GCF_008244545.1
latest
- Scaffold 6465 (246) SAMN12640896 Unknown urine France:Wissous 235 (paeruginosa) University Hospital of Besancon
Strain Details
Pseudomonas aeruginosa 165 GCF_004349905.1
latest
- Contig 6610 (387) SAMN10743806 infection hospital Italy: Trento University of Trento
Strain Details