| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 1619 |
| Species | Pseudomonas aeruginosa |
| Strain | 1619 |
| Description/Title | |
| Annotated Genes | 6414 |
| Partial Genes | 278 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | United Kingdom: Scotland, Aberdeen Royal Infirmary |
| Isolation Source | cystic fibrosis patient |
| Latitude/Longitude | 57.154787 N 2.136031 W |
| Sample Provider | |
|---|---|
| Name | Chaitanya Joshi |
| c.joshi@abdn.ac.uk | |
| Institution | University of Aberdeen |
| Date Collected | 2017-08-16 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 2010 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 178 |
| Contigs | |
| Contig N50 | 142657 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN10484671 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |