| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 16048 |
| Species | Pseudomonas aeruginosa |
| Strain | 16048 |
| Description/Title | |
| Annotated Genes | 5953 |
| Partial Genes | 188 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Nigeria |
| Isolation Source | sputum |
| Sample Provider | |
|---|---|
| Name | Isabella Tickler |
| isabella.tickler@cepheid.com | |
| Institution | Cepheid |
| Date Collected | 2018 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 96 |
| Contigs | |
| Contig N50 | 153575 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN17860455 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |