This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 14650 | GCF_001414085.1 latest |
82 | Scaffold | 5754 (44) | SAMN04128839 | human | Pseudomonas aeruginosa | sputum | Canada:Alberta | 192 (paeruginosa) | Oklahoma State Universtiy |
Strain Details
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Pseudomonas aeruginosa 14651 | GCF_001414155.1 latest |
110 | Scaffold | 6043 (54) | SAMN04129507 | human | Pseudomonas aeruginosa | sputum | Canada:Alberta | 179 (paeruginosa) | Oklahoma State Universtiy |
Strain Details
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Pseudomonas aeruginosa 14672 | GCF_001414165.1 latest |
76 | Scaffold | 5742 (42) | SAMN04129521 | human | Pseudomonas aeruginosa | sputum | Canada: Alberta | 192 (paeruginosa) | Oklahoma State Universtiy |
Strain Details
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Pseudomonas aeruginosa 14673 | GCF_001414175.1 latest |
71 | Scaffold | 5746 (28) | SAMN04129522 | human | Pseudomonas aeruginosa | sputum | Canada: Alberta | 192 (paeruginosa) | Oklahoma State Universtiy |
Strain Details
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Pseudomonas aeruginosa 1472 | GCF_003863675.1 latest |
- | Contig | 6607 (436) | SAMN10484664 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Royal Infirmary, Edinburgh | 348 (paeruginosa) | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 148 - Assembly GCF_000647595.2 | GCF_000647595.2 latest |
126 | Contig | 6174 (161) | SAMN02732279 | gastric juice | Mexico: Cancun |
Universidad Nacional Autonoma de Mexico, Instituto de Investigaciones Biomedicas
Universidad Nacional Autonoma de Mexico
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Strain Details
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Pseudomonas aeruginosa 149 | GCF_004350115.1 latest |
- | Contig | 6554 (188) | SAMN10743793 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 14_3192 | GCF_028435865.1 latest |
- | Contig | 6587 (270) | SAMN18869627 | Cystic Fibrosis | Bronchoalveolar lavage fluid | Spain: Santander | 175 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 15 | GCF_004370015.1 latest |
- | Contig | 6738 (148) | SAMN10478404 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 709 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 150 | GCF_004350095.1 latest |
- | Contig | 6552 (184) | SAMN10743794 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 151 Assistante | GCF_002312145.1 latest |
41 | Contig | 6349 (93) | SAMN06547047 | Dental unit waterline | Canada: Montreal | Universite Laval |
Strain Details
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Pseudomonas aeruginosa 1510 | GCF_003863825.1 latest |
- | Contig | 5638 (124) | SAMN10484665 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | 584 (paeruginosa) | University of Aberdeen |
Strain Details
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Pseudomonas aeruginosa 152 | GCF_004350085.1 latest |
- | Scaffold | 6059 (581) | SAMN10743795 | infection | hospital | Italy: Trento | 253 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 152504sp2 | GCF_003840095.1 latest |
- | Contig | 6249 (111) | SAMN07423902 | human | pneumonia | pneumonia patient sputum | Portugal | 560 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 152609 | GCF_013284945.1 latest |
- | Scaffold | 6468 (179) | SAMN15010102 | unknown | Bones | France: Paris | 233 (paeruginosa) | University Hospital of Besancon |
Strain Details
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Pseudomonas aeruginosa 152962 | GCF_016811975.1 latest |
- | Complete Genome | 6388 (61) | SAMN17575725 | Sepsis | blood | France: Paris | 654 (paeruginosa) | French National Center for Antibiotics Resistance |
Strain Details
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Pseudomonas aeruginosa 153 | GCF_004350055.1 latest |
- | Contig | 6763 (504) | SAMN10743796 | infection | hospital | Italy: Trento | 179 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 154 | GCF_004350025.1 latest |
- | Contig | 6592 (218) | SAMN10743797 | infection | hospital | Italy: Trento | 155 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 155 | GCF_004350485.1 latest |
- | Contig | 6441 (229) | SAMN10743798 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 156 | GCF_004350455.1 latest |
- | Contig | 5981 (213) | SAMN10743799 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
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