| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 152504sp2 |
| Species | Pseudomonas aeruginosa |
| Strain | 152504sp2 |
| Description/Title | |
| Annotated Genes | 6249 |
| Partial Genes | 111 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | pneumonia |
| Host Species Tissue Sampled | sputum |
| Geographic Location | |
|---|---|
| Location Name | Portugal |
| Isolation Source | pneumonia patient sputum |
| Sample Provider | |
|---|---|
| Name | Julie Jeukens |
| julie.jeukens.1@ulaval.ca | |
| Institution | University Laval |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 560 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 40 |
| Contigs | |
| Contig N50 | 417824 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN07423902 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 6249 |
| CDS | 6183 |
| pseudo | 123 |
| tRNA | 57 |
| rRNA | 7 |
| ncRNA | 4 |
| tmRNA | 1 |
| pseudogenic_rRNA | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |