Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0100425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_000688275.1
GCF_000688275.1|latest |
| Locus Tag |
Q378_RS0100425
|
| Name |
|
| Replicon | scaffold00001.1_C |
| Genomic location | 100310 - 101959 (- strand) |
Cross-References
| RefSeq | WP_016395010.1 |
| GI | 511761811 |
| NCBI Locus Tag | Q378_RS0100425 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
VRR-NUC domain-containing protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -3.97 |
| Kyte-Doolittle Hydrophobicity Value | -0.162 |
| Molecular Weight (kDa) | 62.6 |
| Isoelectric Point (pI) | 6.51 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003538 (532 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: Q378_RS0100425
Search term: VRR-NUC domain-containing protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
3.6e-19
Percent Identity:
33.8
|
References
No references are associated with this feature.