Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0100425

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TACCAATTGCCGCCGTTGCGCCAGCAGGCCCTGGCGCAGATGTTCGCCAAGGGTGAAATCGACGATCACCTGAACCGCCTGCGCGTGGATCAATCACTGC GCATGCGACAGTTCTGTCAGCAGTTGCAGGTGCACCTGGGAGGCCAACTGGACTTTGCCATGCCCGAGGGCGGCAATGCCGTGTGGGTGCGCTTGTTGCA GCCTGTCCCCGTGGATCGCCTGGTGGCGGCGATGGCGGGTACCGCCTTGGCAGTCATCGCCGGCGCACGGTTCAGCGTGCAGGGACGTTACCAGCACTGC TTGCTGCTGACCTGGACGGGGCACGGCTCAGCTGCGCTGCGCGAGGCGCTGTGCCGGCTGGGCGATGCCTTGGCGCAGGACGGCGGGCGCCATTCGTCGG CAGGGTTGATTGCGCTCGGGCAAGGCGAGCAGTGACGCTTGCCAGTGCTGGTTATCTGTATGTATAAACAGTGCCTGTTCCTCTTTGCCTGACGTGCCTT
DNA Sequence for Gene
>Q378_RS0100425
GTGATTGCCCATTCCGTCGATGACCCGCTGTACTACCTGCATAACTTTCGCCAGGTGTTGCAGTGGGTCGAACAACGCTATGCCGATGTGCTCGACGCCC AGGAGCTGGCTTTCCTGCAGGCCTTCGCCGCACTGGAGCAGCCGGCCCAGGCGCTGATGGTGCGCATGGTCATGCGCAAGGGCGAGCTGTTTCGCAGTGA TCGTCTCGACTATGCCGAAATCGGCGATACCCGCCAGGCGCTGCAACCCCTGCAGGCGTTGGGCTGGGTACGCGAGCCCGAGCAGTTGAGCGTGGAGCAG TTGTTCGCCTTGCTGCGCAAGGACGAACTGGCCCAGTGTTTCGCCAGCCAGCTGAGCCGACCGCGCGCCGCCAAGCGCGACCTGTTCGACCAGTTGCAAG CCCTGGACCTGGCGCCCAGGCCGCTCTCGCAATGGTTCGCCCTGGCTTCGGTGAGCATCCTTGAGTGGTGCCTGCAGCCGTTGTGCGACCGCATGCGCTT GCTGTTCTTCGGCAACCTGTATCAGGACTGGTCGGAGTTCGTGCTCGCCGACCTGGGCCTGCTGCGTTTCGAGCAGGTGCCGTTCAGCGCTGGATCACGC GCGCTGCAACAGCGCAGCGACGTCGACCTGGCGATGAGCTTGCACCGGTGCACCGAGCGCCTTGAGCACGGTGAGGCCCCAGCGGCGATCCTCGATGCCC TGGCCCCATGGCGCAGCGACAACCCTTGGTTGGCACGGCGCCATGGGCGCTTGTTGTTCGCCCTTGGCCAGCAGTGCGAGCGCCTGGGTGATTGGGACCA GGCCCTGGCGGTGTATGCCCGCAGCAACCACGCACAAGCGCGCATCCGCCAGGTGCGGGTGCTCGAGCGCAGTGCGCGCTGGCAAGAGGCTCAGGCGTTG GCCCTGCAACTGGCCGCGGCACCGGCCAACGCACTGGAAGTACAGGCACTGGAGCGCATGCTGCCGCGCCTGGCGCGCAAGCTGGGCGGGCCGGCGCAAC CGCGAAGGCGCACCCAGACCCCGCAACTGATCGAACTGGAGCTGCCACGCGAGCTGGCTGCTCTGGGCGTCGAGGAGGCAGTGCGGCATCACCTGGCACA GGCTGGCGGCCAGGTGCATTACGTGGAAAACACGCTGTTCAACAGCCTGTTCGGCTTGTTGTGCTGGGATGCGATCTTCGCCCCGGTGCCGGGCGCATTC TTCAATCCGTTCCAGGCTGCCCCCCAGGACCTGCATGACAGCGATTTCCAGCTGCGCCGCCAAGCCCTGTTCGACGCCTGCCTGGGGCGGCTCGACGATG GCACGCATCGCCAGGCGATTCTCGACTGCTTTGCCACCAAGTACGGCCTGCAATCGCCGTTCGTGTTCTGGCAGGTGCTTGACCAGGCCTTGCTCGAGCA GGCCTTGGCCTGCCTGCCACCTGCACACCTCAAGCAATGTTTCCTGCGCCTGCTGCAGGACATCCGCAGCAACCGCGCCGGCATGCCCGACCTGATCCAG TTCTGGCCCGAGCAGGGCAGTTACCGCATGGTCGAAGTCAAGGGGCCGGGGGATCGGTTGCAGGACAACCAGCTGCGCTGGCTGGCATTCTGCGCCGAAC ACGGCTTGCCGGTGGCAGTCTGTCATGTGCGCTGGAGCGAGCCGGTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCTATCGGGTAGCGGTGCGCGCCCTGTGCGAGTTCAGTGCCAAGGTCGGTGACCTGGACTTGCGCTTCACCCCGTCGCCCACGGCCCAGGAAGGGATCGA AGGCCACCGCCGGGTGGTGGCCAGGCGTGCGGCCGGCTATGAGGCGGAAGTCGCCCTCGAAGGCGAGTATCGAGGCTTGCTGGTGCGCGGCCGGGCCGAC GGCTACGACTCGGTCGCCAATCGCCTGGAGGAGATCAAGACCCACAGGGGCGATCTGGCCCGACAGCCGGCCAACCATCGCCAGTTGCACTGGGCCCAGG CCAAGGTCTATGGCTGGCTGATGTGCCAGGCGCGGCAGTTGCCGGCCATCGAGGTGGCGCTGGTCTATCTGGATGTGGACAACGACGGCCAGACGCAGAT CAGCGAGCACTACAGCGCCGAGGCCTTGCGTGCCTTCTTCGAAACCCAGTGCCAGCGCTTCCTGGCCTGGGCCCAGGCCCAGGAGCGTCGCCTGGCCGAG
Amino Acid Sequence
>VRR-NUC domain-containing protein
MIAHSVDDPLYYLHNFRQVLQWVEQRYADVLDAQELAFLQAFAALEQPAQALMVRMVMRKGELFRSDRLDYAEIGDTRQALQPLQALGWVREPEQLSVEQ LFALLRKDELAQCFASQLSRPRAAKRDLFDQLQALDLAPRPLSQWFALASVSILEWCLQPLCDRMRLLFFGNLYQDWSEFVLADLGLLRFEQVPFSAGSR ALQQRSDVDLAMSLHRCTERLEHGEAPAAILDALAPWRSDNPWLARRHGRLLFALGQQCERLGDWDQALAVYARSNHAQARIRQVRVLERSARWQEAQAL ALQLAAAPANALEVQALERMLPRLARKLGGPAQPRRRTQTPQLIELELPRELAALGVEEAVRHHLAQAGGQVHYVENTLFNSLFGLLCWDAIFAPVPGAF FNPFQAAPQDLHDSDFQLRRQALFDACLGRLDDGTHRQAILDCFATKYGLQSPFVFWQVLDQALLEQALACLPPAHLKQCFLRLLQDIRSNRAGMPDLIQ FWPEQGSYRMVEVKGPGDRLQDNQLRWLAFCAEHGLPVAVCHVRWSEPV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site