Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827

Strain Overview
Organism Name Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_000688275.1
Species Pseudomonas plecoglossicida
Strain NBRC 103162 = DSM 15088 assembly GCF_00068827
Description/Title Sample from Pseudomonas plecoglossicida NBRC 103162 = DSM 15088
Annotated Genes 4881
Partial Genes 167
Host Information
Host Species Taxonomic Name Plecoglossus altevalis
Host Species Common Name ayu
Host Species Taxonomy ID 61084
Geographic Location
Location Name Japan: Tokushima
Sample Provider
Name
E-mail
Institution DOE Joint Genome Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000688275.1
Assembly Status latest
Scaffolds
Contigs 61
Contig N50 151081
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02743900
NCBI Taxonomy ID 1215115
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4823
CDS 4745
tRNA 63
pseudo 58
rRNA 11
ncRNA 4

Subcellular Localization

Localization Count
Cytoplasmic 2135
Cytoplasmic Membrane 1098
Periplasmic 146
Outer Membrane 120
Extracellular 55
Unknown 1080
Unknown (This protein may have multiple localization sites) 111
Flagellar 32
Fimbrial 4
T3SS 5

Replicons

58 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF