Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS15835

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas resinovorans NBRC 106553
GCF_000412695.1|latest
Locus Tag
PCA10_RS15835
Name
Synonym: PCA10_31970
Replicon NBRC 106553 DNA, complete geonome
Genomic location 3523025 - 3526213 (+ strand)

Cross-References

RefSeq WP_016493075.1
GI 512735233

Product

Feature Type CDS
Coding Frame 1
Product Name
multidrug efflux RND transporter permease subunit
Synonyms
Evidence for Translation
Charge (pH 7) -12.67
Kyte-Doolittle Hydrophobicity Value 0.289
Molecular Weight (kDa) 115.3
Isoelectric Point (pI) 5.25

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 1326.6 66.73 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs 1 predicted inparalogs
RND-type multidrug efflux pump membrane protein MexF (PCA10_RS12815) 42.8% identity

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PCA10_RS15835

Human Homologs

References

No references are associated with this feature.