Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS12815

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas resinovorans NBRC 106553
GCF_000412695.1|latest
Locus Tag
PCA10_RS12815
Name
Synonym: PCA10_25870
Replicon NBRC 106553 DNA, complete geonome
Genomic location 2840584 - 2843736 (- strand)

Cross-References

RefSeq WP_016492513.1
GI 512734667

Product

Feature Type CDS
Coding Frame 1
Product Name
RND-type multidrug efflux pump membrane protein MexF
Synonyms
Evidence for Translation
Charge (pH 7) -6.27
Kyte-Doolittle Hydrophobicity Value 0.418
Molecular Weight (kDa) 111.6
Isoelectric Point (pI) 5.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 761.5 42.79 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG142515 (1 members)
Putative Inparalogs 1 predicted inparalogs
multidrug efflux RND transporter permease subunit (PCA10_RS15835) 42.8% identity

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PCA10_RS12815

Human Homologs

References

No references are associated with this feature.