Pseudomonas syringae pv. tomato NYS-T1, NB04_RS20105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. tomato NYS-T1
GCF_000765305.1|latest |
| Locus Tag |
NB04_RS20105
|
| Name |
Synonym: NB04_20100 |
| Replicon | Contig18 |
| Genomic location | 34340 - 37474 (+ strand) |
Cross-References
| RefSeq | WP_007246192.1 |
| GI | 494456350 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
multidrug efflux RND transporter permease subunit
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -6.13 |
| Kyte-Doolittle Hydrophobicity Value | 0.305 |
| Molecular Weight (kDa) | 112.4 |
| Isoelectric Point (pI) | 5.81 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| adeF | AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] | ARO:3000777 | protein homolog model | Strict | 765.4 | 42.6 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000417 (2093 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: NB04_RS20105
Search term: multidrug efflux RND transporter permease subunit
|
Human Homologs
References
No references are associated with this feature.