Pseudomonas syringae pv. tomato NYS-T1, NB04_RS20105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. tomato strain NYS-T1 Contig18, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGATAACGCCGCCAAGGTCAAGCTGACCCTGGAAGACAACAGCGTTTACGCTCAGGAAGGCAAACTGGAGTTCTCCGAAGTGTCGGTTGACCAGAC CACCGGTTCCGTCACTCTGCGCGCAGTCTTCCCCAACCCTGAACACCGCTTGCTGCCCGGCATGTTCGTTCACGCGCAATTGCAGGCAGGCGTCAGTGCG AAAGCCATTCTGGCACCGCAACAAGGCGTGACCCGCGACCTGAAAGGCACGCCGACCGCCATGATTGTCAATCAGGACAACAAGGTTGAATTGCGCACAC TGGTCGCCAACCGCACCGTGGGCAGCGACTGGCTGATCGAGGACGGCCTGAAAGAAGGCGATCGCGTGATCACCGAAGGTCTGCAATACGTCAAACCAGG CGCAGAAGTGAAAGCTGCTGAAGCGACCAACGTCAAAGGAGCAAACCCGGCACCTGCCCCGGCCACTGAAAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>NB04_RS20105
ATGTCGAAATTTTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCTATTTCCAGCCTGCCGATCAACC AGTACCCAAGTATCGCGCCACCGGCCATTGCGATTCAGGTGACCTACCCGGGCGCTTCTGCGCAGACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGCATCGACAACTTGCGTTATGTGAGTTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCAATCAGGGCACCAACCCG GATACCGCGCAGGTGCAGGTGCAGAACAAGCTCAACCTGGCGACCCCGCTGCTGCCACAGGAAGTGCAGCAACAGGGTATTCGCGTGACCAAGGCGGTGA AGAACTTCCTGATGGTTATCGGCCTGGTGTCCGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATCGTCTCGAACATGCAGGACCCGATTTC CCGGACCTCCGGTGTGGGCGACTTCCAGGTGTTCGGCTCCCAGTACGCCATGCGCATCTGGCTCGACCCGGCCAAGCTCAACAACTTCCAGCTGACCCCG GTGGACGTGCGAGACGCAATCACCGCGCAGAACGTTCAGGTGTCGTCCGGTCAGTTGGGCGGTCTGCCCTCGATCAGCGGCCAGCAACTGAACGCCACAA TCATCGGCAAGACGCGTCTGCAGACGGCTGAACAGTTCGGCAATATCTTTCTCAAGGTCAACACCGACGGCTCACAGGTTCGCCTCAGAGACGTCGCCAC CGTGGGCCTGGGCGCAGAGAACTACAGCACCGACTCGCAGTTCGACGGCAAACCTGCCTCGGGTCTGGCGATCAAGCTGGCCACCGGCGCCAATGCGCTG GACACCGCCAAGGCCATCCGCGCGACCGTTTCGTCGCTGGAGCCGTTTTTCCCGCCGGGCATGAAAGTGGTTTACCCGTACGACACCACGCCTGTGGTGA GCGAATCGATCAAAGGTGTGGTTCACACCCTGATCGAAGCCATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAAAACTTCCGCGCCACCGTGAT CACCACGCTGACGGTTCCGGTCGTACTGTTGGGCACCTTCGGCATCCTCGCGGGCTTCGGTTTCACCATCAACACCCTGACCATGTTCGGCATGGTACTG GCCATCGGCTTGCTGGTGGACGATGCGATTGTGGTGGTGGAAAACGTCGAGCGGGTGATGGAGGAAGAAAAGCTTTCTCCGCGTGACGCAACCATCAAAT CCATGACGCAGATCCAGGGCGCACTGGTTGGTATTGCACTGGTGCTGTCGGCGGTGCTGCTGCCAATGGCGTTCTTCGGCGGCTCGACCGGTGTGATCTA CAAGCAGTTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTAGTGGTCGCGCTGATCTTTACCCCGGCGCTGTGCGCCACCATGCTCAAGCCTATC GACGAGAAGACCCACGGCCAGCCCAAGCGTGGTTTCTTCGGCTGGTTCAACCGCACCTTCGACCGCAGCGTTGTGAGTTACGAGCGCGGCGTGGGCAACA TGCTCAAGCACAAGTGGCTGTCGTACCTGGGCTATATCGTGATTTTTGCCGGCATGATCTTCATGTTCATGCGCATTCCCGCAGCGTTCCTTCCGGACGA AGATCAGGGCGTTATCTTCGCTCAGATCCAGACACCGGCCGGCTCCTCGACCGAGCGCACGCAAGAAGTCATCGACAACATGCGTGAATACCTGCTGACC AAGGAAAGCGGTGCAGTGAAGTCGGTGTTCTCGGTGAACGGTTTCAACTTTGCGGGCCGCGGTCAAAGCTCGGCGATTGCATTTGTCATGCTCAAGCCGT GGGAAGAACGTGACGCCGAAAACAGCGTCTTCAAACTGGCAGAGCGCGCTCAGGGCTACTTCTTCAGCCTGCGTGATGCAATGGTGTTCGCCATCGTGCC ACCGTCGGTACTGGAGCTGGGTAACGCGACAGGCTTCGACGTCTACCTGCAGGATCAGGGCGGTGTCGGCCATGCAAAACTGATGGAAGCACGTAACCAG TTCCTCGGCATGGCCGCGCAGAGCAAGATTCTCGCCGGTGTGCGTCCGAACGGGCTGAACGACGAGCCGCAGTACCAGTTGATCATCGACGACGAACGCG CCAGTGCGTTGGGCATTACCCTGTCGGACATCAACAACACCCTGTCCATCGCGTTGGGTGGCAGCTACGTCAATGACTTCATCGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGTGATGCAGGTGCCCGTATGACGCCTGAAGACCTGAAAAAATGGTACGTGCGCAACAGCGCGGGCGAGATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAGTGGACCTACGGTTCTCCAAAACTGTCGCGCTACAACGGCGTGGCGGCAGAGGAAATCCTCGGTACGCCGGCACCGGGCTACA GCAGCGGCGATGCAATGGCCGAAGTTGAAGCGCTGGCCAAGAAACTGCCGCAAGGGATCGGCATCTCCTGGACCGGTCTGTCCTACGAGGAGCGCCTGTC CGGCTCTCAGGCCCCTGCCCTTTACGCGCTGTCGTTGCTGGTCGTGTTCCTGTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATCCCGATCGCGGTCATT CTCGTGGTGCCGCTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGCGGACTGTCGAACGACGTGTTCTTCCAGGTAGGGTTGCTGGTCACAGTCG GGTTGGCGGCGAAGAACGCCATCCTGATCGTCGAGTTCGCCAAAGAGCTGCACGAACAGGGCAAGAGCCTCACCGATGCTGCGATCGAAGCCTGTCGCAT GCGCCTGCGCCCGATCATCATGACGTCCATGGCGTTCATCCTCGGCGTTGTGCCGCTGGCGATTTCCTCGGGCGCAGGTTCGGGCAGTCAGCATTCGATC GGTACAGGCGTAATTGGCGGTATGATCACAGCCGTCGTTCTGGCGATCTTCTGGGTGCCACTGTTCTTCGTATCGATTTCAGGGCTCTTCAAGAGCAAGC AGAAACATATTTCACACGATGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCATTGATCTCTCTTGCAGTTACCGCGTTCATACTCGGCGGCTGCTCTTTGATCCCCGAGTACAAGCAGCCGGAGGCCCCGGTCGCCGCACAATA CCCGCAAGGCCCGGCGTACTCGCCGGTCGAAGGGGCCAAAATGGCCGCTGCGGAGCAAGGCTGGCGTCATTTCTTCAATGACCCGGCGCTGCAACAGCTG ATCGAAACCGCGCTGCTCAACAACCGTGACCTGCGGGTCGCGGCGCTGAACATCGACGCCTACCGTGCGCAGTACCGCATCCAGCGTTCGGACCTGTTCC CGGCGGTCTCGGCCACTGGCAGCGGCTCACGTCAGCGCGTGCCTGCCGACCAGTCGCAGACCGGCCAATCGGCGATCAGCAGCAGCTACTCGGCAACGCT GGGCGTCAGCGCTTACGAGCTGGACCTGTTTGGTCGGGTGCGCAGCCTCAGCGAACAGGCGCTGGAAACCTACTTCTCCAGCGAAGAAGCGCGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVRDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLRDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DEKTHGQPKRGFFGWFNRTFDRSVVSYERGVGNMLKHKWLSYLGYIVIFAGMIFMFMRIPAAFLPDEDQGVIFAQIQTPAGSSTERTQEVIDNMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDAENSVFKLAERAQGYFFSLRDAMVFAIVPPSVLELGNATGFDVYLQDQGGVGHAKLMEARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMTPEDLKKWYVRNSAGEMVPFS AFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGDAMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSI GTGVIGGMITAVVLAIFWVPLFFVSISGLFKSKQKHISHDEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site