Pseudomonas syringae pv. tomato NYS-T1

Strain Overview
Organism Name Pseudomonas syringae pv. tomato NYS-T1
Species Pseudomonas syringae pv. tomato
Strain NYS-T1
Description/Title Microbe sample from Pseudomonas syringae pv. tomato
Annotated Genes 5705
Partial Genes 90
Host Information
Host Species Taxonomic Name Solanum lycopersicum
Host Species Common Name tomato
Host Species Taxonomy ID 4081
Geographic Location
Location Name USA: Ontario County, NY
Isolation Source plant
Sample Provider
Name Surya Saha
E-mail ss2489@cornell.edu
Institution Cornell University
Date Collected 2009

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000765305.1
Assembly Status latest
Scaffolds 84
Contigs 96
Contig N50 172519
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03093524
NCBI Taxonomy ID 323
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5644
CDS 5575
pseudo 61
tRNA 58
rRNA 4
ncRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 2333
Unknown 1536
Cytoplasmic Membrane 1220
Periplasmic 165
Unknown (This protein may have multiple localization sites) 129
Outer Membrane 115
Extracellular 77

Replicons

84 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF