Pseudomonas denitrificans ATCC 13867, H681_17805 (ruvB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_17805
Name
ruvB
Replicon chromosome
Genomic location 4011138 - 4012196 (- strand)

Cross-References

RefSeq YP_007658968.1
GI 472326722
EC Number 3.6.1.-
Entrez 14997686
INSDC AGI25428.1
NCBI Locus Tag H681_17805
UniParc UPI0002C4DB9B
UniProtKB Acc M4WZ55
UniProtKB ID M4WZ55_PSEDE
UniRef100 UniRef100_M4WZ55
UniRef50 UniRef50_Q5SL87
UniRef90 UniRef90_A6VA05

Product

Feature Type CDS
Coding Frame 1
Product Name
Holliday junction DNA helicase RuvB
Synonyms
Evidence for Translation
Charge (pH 7) -10.29
Kyte-Doolittle Hydrophobicity Value -0.198
Molecular Weight (kDa) 38957.0
Isoelectric Point (pI) 4.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7X7Q RECOMBINATION/DNA 03/10/22 CryoEM structure of RuvA-RuvB-Holliday junction complex Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 7.02 ELECTRON MICROSCOPY 90.6
7X7P MOTOR PROTEIN/DNA 03/10/22 CryoEM structure of dsDNA-RuvB-RuvA domain3 complex Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 7.02 ELECTRON MICROSCOPY 93.3
6BLB HYDROLASE 11/09/17 1.88 Angstrom Resolution Crystal Structure Holliday Junction ATP-dependent DNA Helicase (RuvB) from Pseudomonas aeruginosa in Complex with ADP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.88 X-RAY DIFFRACTION 90.6
7X5B MOTOR PROTEIN 03/04/22 Crystal structure of RuvB Pseudomonas aeruginosa PAO1 2.16 X-RAY DIFFRACTION 90.3

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 588 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000932 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_17805
Search term: ruvB

Human Homologs

References

No references are associated with this feature.