Pseudomonas denitrificans ATCC 13867, H681_17805 (ruvB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:000073 Holliday junction ATP-dependent DNA helicase RuvB - - 23 184 2.2E-95
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 261 334 3.62E-25
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 184 1.1E-43
NCBIfam TIGR00635 JCVI: Holliday junction DNA helicase RuvB IPR004605 Holliday junction branch migration complex subunit RuvB 28 330 0.0
FunFam G3DSA:1.10.10.10:FF:000086 Holliday junction ATP-dependent DNA helicase RuvB - - 261 337 1.0E-40
Pfam PF17864 RuvB AAA lid domain IPR041445 RuvB, AAA lid domain 185 258 1.7E-32
Pfam PF05491 RuvB C-terminal winged helix domain IPR008823 RuvB C-terminal winged helix domain 259 329 4.2E-25
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
Gene3D G3DSA:1.10.8.60 - - - 186 260 1.8E-33
FunFam G3DSA:1.10.8.60:FF:000023 Holliday junction ATP-dependent DNA helicase RuvB - - 187 259 2.5E-35
Pfam PF05496 Holliday junction DNA helicase RuvB P-loop domain IPR008824 RuvB-like P-loop domain 24 182 2.0E-81
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 55 182 1.6E-11
PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature - - 347 352 1.9E-5
CDD cd00009 AAA - - 42 179 1.0749E-12
PANTHER PTHR42848 - IPR004605 Holliday junction branch migration complex subunit RuvB 2 336 0.0
PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature - - 63 82 1.9E-5
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 255 2.31E-51
Hamap MF_00016 Holliday junction branch migration complex subunit RuvB [ruvB]. IPR004605 Holliday junction branch migration complex subunit RuvB 1 352 183.479645
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 261 352 2.4E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.