Pseudomonas denitrificans ATCC 13867, H681_17805 (ruvB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas denitrificans ATCC 13867, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTCGGCGAGCCGGTGACATTGCATACGCATCTGGTGGTGCGGGAAGACGCCCACCTGCTCTACGGCTTCGCCGAGAAGCGCGAGCGCGAGCTGTTCCG CGAGCTGATCCGTCTCAATGGGGTGGGGCCGAAACTTGCGCTTGCACTGATGTCGGGTCTGGAAGTCGATGAGCTGGTACGCTGCGTCCAGGCGCAGGAT ACTTCCACCCTGGTGAAGATTCCCGGAGTGGGGAAGAAGACTGCCGAGCGTCTGCTGGTCGAACTCAAGGATCGCTTCAAGGCCTGGGAAAATATTCCGT CGATCGCGCCTCTGGTGGTGGAACCCATGCGGGTCGCCGCAGTCTCAAGCGCCGAGTCCGATGCAGTCAGTGCCCTGATCGCGTTGGGCTTCAAGCCGCA GGAGGCGAGCCGTGCCGTGGCCGCCGTGCAGGAGGAAGGTCTGTCCAGCGAAGAACTCATCCGCCGCTCGTTGAAAGGCATGGTCTAGGTGTAAATATCG
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| DNA Sequence for Gene |
>H681_17805
|ruvB
ATGATCGAAGCTGATCGCCTGATTTCCTCTGCCTCCGGCCGCGACCGCGAAGAGCAGTTCGACCGTGCCATCCGCCCATCGAAGCTGGCCGATTACATCG GCCAGCCGGTGGTGCGCGAGCAGATGGAACTGTTCATCCAGGCGGCCAGGGGGCGCAACGAAGCGCTCGATCACACGCTGATCTTCGGTCCGCCGGGCCT GGGCAAGACCACGCTGGCGAACATCATCGCCCAGGAAATGGGCGTGTCGCTCAAGAGCACATCCGGCCCGGTGCTGGAGCGCCCCGGTGATCTGGCGGCG TTGCTGACCAACCTCGAACCCAACGATGTGCTGTTCGTCGACGAGATCCACCGGCTGTCGCCCATCGTCGAGGAAGTGCTGTACCCGGCGATGGAAGACT TCCAACTGGACATCATGATCGGCGAGGGGCCTGCGGCCCGTTCGATCAAGCTGGACCTGCCGCCGTTCACCCTGGTGGGCGCGACGACCCGCGCCGGGAT GCTGACCAATCCGCTGCGTGATCGCTTCGGCATCGTCCAGCGTCTGGAGTTCTACGGGGTGGATGACCTGTCCACCATCGTCAGCCGTTCCGCTGGCATC CTCGGGCTGGAGATCGAGCCGGCGGGCGCCTACGAGATCGCCCGGCGGGCACGGGGAACGCCGCGGATCGCCAACCGCCTGCTGCGGCGCGTGCGGGACT TCGCCGAAGTGCGCGGCACTGGCCATATCAGCAGCGACATCGCCGACAAGGCGCTGAACCTGCTGGACGTTGACGAGCGTGGCTTCGATCATCAGGATCG CCGCCTGCTGCTGACCATGATCGACAAGTTCGACGGCGGGCCGGTGGGTATCGACAACCTGGCCGCCGCGATCAGCGAAGAGCGGCACACGATCGAGGAT GTGCTGGAACCGTATCTGATCCAGCAGGGCTATATCATGCGCACGCCGCGGGGACGGGTCGTCACCCGGCATGCGTATCTGCATTTCGGCCTGAACGTGC CGAAGCGGATGGGGGAGGGGACGACGTCGGATCTGTTCGTCCCTGAAGATGGTAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCATTTGTAGACGATTGCCGATTGGCAAAATCTCTACTTGGTTCTAGAGTATGCGCGCGCAACACGGGGGTCAGCCGTTCCAGCAGCGGTATCGGGTC TATTACGAGGACACCGATGCCGGCGGCATCGTCTACTACGTCAACTACCTCAAGTTCATGGAGCGGGCTCGTACCGAGCGGCTGCGTGATCTGGGCTTTG CCCAGTCGCAGCTGGCGGGAGAGAACCTGCTTTTCGTCGTTCATTCGGCCGAGGCGCGCTACCACGCGCCGGCCCGCCTGGATGACGAGCTGCTCGTCAG CGCCGAGGTGGAGGAGTTGAACCGCGCGAGCCTGAAGTTTCGTCAACAGGTTCGGCGGGCGTCGGATTCGACCTTGCTCTGCGAGGGGCGATTCCTGGTG GCGTGCGTGCGGGCGGATACCCTGAAGCCCCGCGCTATCCCAGATGTGTTGCGTGCGGCATTTGCCGGCAGTCCGGACACCCTTTCAGCAGGAGATTAAC
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| Amino Acid Sequence |
>Holliday junction DNA helicase RuvB
MIEADRLISSASGRDREEQFDRAIRPSKLADYIGQPVVREQMELFIQAARGRNEALDHTLIFGPPGLGKTTLANIIAQEMGVSLKSTSGPVLERPGDLAA LLTNLEPNDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYGVDDLSTIVSRSAGI LGLEIEPAGAYEIARRARGTPRIANRLLRRVRDFAEVRGTGHISSDIADKALNLLDVDERGFDHQDRRLLLTMIDKFDGGPVGIDNLAAAISEERHTIED VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNVPKRMGEGTTSDLFVPEDGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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