Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4537

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4537
Name
Replicon chromosome
Genomic location 5171685 - 5172248 (- strand)

Cross-References

RefSeq YP_276653.1
GI 71735403
Entrez 3557742
INSDC AAZ35167.1
NCBI Locus Tag PSPPH_4537
UniParc UPI0000575FF7
UniProtKB Acc Q48D88
UniProtKB ID Q48D88_PSE14
UniRef100 UniRef100_F3EJJ8
UniRef50 UniRef50_Q87LA3
UniRef90 UniRef90_Q889U1

Product

Feature Type CDS
Coding Frame 1
Product Name
single-stranded DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.80
Kyte-Doolittle Hydrophobicity Value -1.061
Molecular Weight (kDa) 20.8
Isoelectric Point (pI) 5.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 587 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001478 (538 members)
Putative Inparalogs 1 predicted inparalogs
single-stranded DNA-binding protein (PSPPH_B0045) 85.6% identity

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4537

Human Homologs

Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.7e-16
Percent Identity: 39.1

References

No references are associated with this feature.