Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4537

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10302
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10302
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 187 3.77E-59
Hamap MF_00984 Single-stranded DNA-binding protein. IPR011344 Single-stranded DNA-binding protein 5 115 36.200001
NCBIfam TIGR00621 JCVI: single-stranded DNA-binding protein IPR011344 Single-stranded DNA-binding protein 3 187 4.1E-56
FunFam G3DSA:2.40.50.140:FF:000244 Single-stranded DNA-binding protein - - 1 144 3.7E-99
CDD cd04496 SSB_OBF IPR000424 Primosome PriB/single-strand DNA-binding 8 103 3.49963E-40
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 147 186 170.0
MobiDBLite mobidb-lite consensus disorder prediction - - 110 187 -
Pfam PF00436 Single-strand binding protein family IPR000424 Primosome PriB/single-strand DNA-binding 5 107 9.2E-38
PANTHER PTHR10302 SINGLE-STRANDED DNA-BINDING PROTEIN IPR011344 Single-stranded DNA-binding protein 3 143 3.9E-30
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 175 3.3E-45
MobiDBLite mobidb-lite consensus disorder prediction - - 112 175 -
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 1 161 1.3E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.