Pseudomonas syringae pv. tomato DC3000, PSPTO_4851

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4851
NCBI Old Locus Tag	PSPTO4851
Name	Synonym: PSPTO4851
Replicon	chromosome
Genomic location	5495959 - 5497218 (+ strand)

Cross-References

RefSeq	NP_794585.1
GI	28871966
Entrez	1186534
INSDC	AAO58280.1
NCBI Locus Tag	PSPTO_4851
NCBI Old Locus Tag	PSPTO4851
UniParc	UPI000000946C
UniProtKB Acc	Q87VT4
UniProtKB ID	Q87VT4_PSESM
UniRef100	UniRef100_Q87VT4
UniRef50	UniRef50_Q4KIU4
UniRef90	UniRef90_Q87VT4

Product

Feature Type	CDS
Coding Frame	1
Product Name	type II/III secretion system protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.40
Kyte-Doolittle Hydrophobicity Value	0.186
Molecular Weight (kDa)	43.8
Isoelectric Point (pI)	6.78

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown (This protein may have multiple localization sites) Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 330 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003905 (448 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4851 Search term: type II/III secretion system protein

Human Homologs

References