Pseudomonas syringae pv. tomato DC3000, PSPTO_4851
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTGCTGCTTTACCTGCCTGAAGACGCGAGCAACCCCAGCCGCTCCAGCCAGGTGGTGGTGCCCGCCCTGCGAATTCTCGGGGTTGGAGGGCTGCTCG GCCCTGATCGCGATGGCAAACCTGTGCAGAACATCAGCGCCGACGAACGCTTCAAACAGGAACAACAGCGGATCAACGCCCGAACCGTGACAGTCGCGGT GCCGGAAGCATTGCTGGCGCGGCTGATGCTGGCGTCGCAAACCGGCATATTGCGCCTGGCAGTGCGCAGCGCCGAAGAAAGCAACCTGCAGGATTACTGG GCAAGCGAAACCGGCAGCCGCGATGCCGCCGAGCGGCTGGATTCAGCCAATCGCCAACTGGTCAGCTTTCGGCAACTGAGCCTGAGCCCGACCAGTGCGG CAACGCCGGGCACCGCAACGCGCGCACAGCGCGCTGTCGAGGTGATACGCGGTAACCAGATCACGCAACAAACTCCCTGATTGAGCAAGGATTGCATTTG
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| DNA Sequence for Gene |
>PSPTO_4851
ATGAGCTGTTGTTCCGTGCCCGCTATAAAACCCGGGCTGCTGGTTTTACTTTTCACCGCCTTGTCTGCGTCGTCAGCCTGGGCTGCGTCCGGCAGTTGTG CGGGACTGGCCGCGATGCCCGCCGCCATGGAAATCGATCAGGGCATTCAACAGAATGTCCGCTCTTCGGTGGCCATTACTCGCATCGCCGTGGGCGACCC GAAAATCGCCGATGTGCACGTCAACGGCAGCGACGGCTTTCTGCTGACCGGCGTGGCTCAGGGCACGACCAGCCTGATGGTCTGGACCACCTGCGCCAGC GCCCCGCGCCAGAGCATGGTGTTCGTGCGCGGCCGGGCTACGGCGTCGATGGTCGAACGTGCAAACGCACCTTCTGCCGAGGCCCACGAGGCGCAGTTGC CCAGCCAGGTGCAGACCGACATCCGCTTCGTCGAAGTCAGCCGCACCAGGCTCAAGGAAGCCAGCATCTCGATCTTTGGCAAAGGCTCGAACAACTTTCT GTTTGGCGCGCCTGGCACGGTGCCCGGCGTCACCGTCACGCCGGGCACCGTGAGTGGCACCCTGCCGAGCATCCCGTTGAACAACGGCAATTTCAATATC GTCTGGGGCGGTGGCAGCAGCAAGGTGCTGGGCATGTTGAATGCGATGGAAAACAGCGGCTACGCCTACACGCTGGCACGCCCCAGCCTGGTCGCACTCA ACGGGCAAAGCGCCAGCTTTCTGGCCGGTGGCGAGTTCCCGGTGCCGGTGCCCAATGGCGAAGGCAACGGCATCTCCATCGAGTACAAGGAGTTCGGCGT ACGTCTGACCCTGACGCCAACGATAGTGGGACGTGACCGGATCCTGCTCAAGGTGGCACCGGAGGTCAGCGAACTGGACTTCTCAGCCGGTATTACCATC GCCGGCACAACGGTGCCGGCGCTCAACATCCGTCGCACCGACACCAGCATTGCGCTGGCCGACGGAGAAAGCTTCGTGGTCAGCGGGCTGATCAGCTCCA GCAACGTCGGCGCTGTGGACAAGTTTCCTGGCCTGGGCGACATACCGATTCTCGGTGCGTTTTTTCGCAGTTCGCAAATTCAGCGCAATGAACGCGAACT GCTGATGATCGTCACCCCGCACCTGGTCCAGCCCCTGGCCGTCAACGCCCAACTGCCGTCGCTGCCGGGAGAGGGGCTGCGCAATTACGATCCAAGCTTC CCGCGCCTGCTCTTTATGGAGAGAGGCAACTTCGACCGCAGCAACGGGTTATCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGAGCCTGAGCCAGACGTTCCTGGCAATTACCCGCAACACTACCGATCTGGAATGGCTGCAGAGTGCCCTCGGCTCATTGGGCCAGGTGGTCAGCGC AGGCACCGGCAGCCTCGACGACCTGCTGGCGTTGGTGGATGTGACATTTGCCAGCGTGGTGTTCGTCGGGCTGGACCGTGAGCATTTGATGACCCAGAGC GCCCTGATCGAGAGTGCGCTGGAGGCCAAACCGATGCTGGCCATCGTTGCGCTCGGCGACGGCATGGATAACCAGTTGGTGCTCAACGCCATGCGTGCCG GAGCCCGGGATTTCGTCGCCTACGGCTCTCGCTCCAGCGAGGTCGCCGGCCTGGTCAGACGCCTGAGCAAGCGCCTGCCCGCCGTGACGCCCAACCCGAA CATGAGCGGGCTGTCGGTGCTGTATGGCGCGCAAAACGATGGCGACGGCGCCTTGATCGCGACCCATCTGGCACTGGTGGTGCACAAGACCGGGCAACGC
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| Amino Acid Sequence |
>type II/III secretion system protein
MSCCSVPAIKPGLLVLLFTALSASSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCAS APRQSMVFVRGRATASMVERANAPSAEAHEAQLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNI VWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITI AGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSF PRLLFMERGNFDRSNGLSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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