Pseudomonas syringae pv. tomato DC3000, PSPTO_4365

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4365
NCBI Old Locus Tag	PSPTO4365
Name	Synonym: PSPTO4365
Replicon	chromosome
Genomic location	4925971 - 4928022 (+ strand)

Cross-References

RefSeq	NP_794120.1
GI	28871501
Entrez	1186046
INSDC	AAO57815.1
NCBI Locus Tag	PSPTO_4365
NCBI Old Locus Tag	PSPTO4365
UniParc	UPI00000092B7
UniProtKB Acc	Q87X25
UniProtKB ID	Q87X25_PSESM
UniRef100	UniRef100_Q87X25
UniRef50	UniRef50_D7I4A9
UniRef90	UniRef90_D7I4A9

Product

Feature Type	CDS
Coding Frame	1
Product Name	GGDEF domain/EAL domain protein
Synonyms
Evidence for Translation
Charge (pH 7)	-12.75
Kyte-Doolittle Hydrophobicity Value	-0.160
Molecular Weight (kDa)	76.9
Isoelectric Point (pI)	5.74

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 450 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003960 (524 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4365 Search term: GGDEF domain/EAL domain protein

Human Homologs

References