Pseudomonas syringae pv. tomato DC3000, PSPTO_4365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 246 409 4.6E-30
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 426 676 3.92E-93
SMART SM00267 duf1_3 IPR000160 GGDEF domain 239 411 3.7E-46
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 250 407 1.9E-37
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 194 675 0.0
Pfam PF00563 EAL domain IPR001633 EAL domain 427 662 2.5E-74
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 255 411 2.82E-38
SMART SM00052 duf2_2 IPR001633 EAL domain 421 667 1.8E-116
CDD cd01948 EAL IPR001633 EAL domain 428 667 1.11188E-112
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 421 682 1.1E-100
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 239 412 2.8E-45
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 422 677 5.6E-102
CDD cd01949 GGDEF IPR000160 GGDEF domain 251 409 9.30046E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.