Pseudomonas syringae pv. tomato DC3000, PSPTO_4365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTCTGGGAACACGCCTACTACATCGACTACCGCAACCTGCGTCCGAAGTACGTAGAAGCGTTCTGGAACCTGGTGAACTGGGACTTCGTGGCCAAGC AATACGCGGCCTGAGTCGAGCATCACTGAAAAACCCGGCCTTGCGCCGGGTTTTTTTATGCCTGCCTTTCAAGCACGCCGCCGGGCAATTTCCGAACCCT GAACAGCGACGAACATCGAGTGGCCAACCACGCGAATGACAAATGTTTTCGCCTGCCGCTCGTACATTGTGTATTGTCAGAAAACGCTAGCTGGCTCATA TAACGATGTAAATTCTTTACAGTGTTCTGCTCAAGTTACGTGCATAGCCACCCGACATGCCTGAGTGGCTCGGCCCGGTGGGTGCAAGGAACGCAAAGAT CAGCCTGGTGTGCCAGTTCTGACTCGGTCATGAAAGGCGCATCCGGTTTTTCCAGGGTCATGAGGCTATACGCCCTGCGACACGAACTAAGGAACGGCCA
|
|
| DNA Sequence for Gene |
>PSPTO_4365
TTGAAGCTGGAACTCAAGAACAGCCTGTCGGTAAAGTTGCTGCGCGTCGTACTGCTATCAGCGCTTCTGGTAGGCGTTGTGCTGAGCTGTGCGCAAATCG TCTTCGACGCGTACAAGACCCGTCATGCCGTGGAAACCGATGCCGAACGCATTCTCGGCATGTTCCGCGACCCCTCGACCCAGGCCGTCTACAGCCTGGA CCGCGAGATGGGCATGCAGGTCATCGAAGGTCTGTTTCAGGACGATGCCGTGCGCATGGCCTCGATCGGGCACCCCAATGAAACCCTGCTTGCCGAAAAA GACCGCCCGCTGAAGGCCTCTTCCAGCCGCTGGCTGACCGATCTCATCCTTGGCCAGGAGCGCAGCTTCACCACTCAACTGGTGGGCCGCAGCCCTTACA GCGAGTATTACGGCGACCTGCGCATCACGCTGGACACCGCCAACTACGGCGAAGGTTTTCTGGTCAACGCCGGCATCATTTTCATTGCCGGCGTGCTGCG CGCACTGGCGATGGGGCTGGTGCTGTACCTGGTCTATCACTGGCTGTTGACCAAGCCGCTGTCAAAAATCATCGAACACCTTATTGCGATCAATCCGGAC CGCCCCAGCGAACACCAGTTGCCGCTGCTCAAGGGCCATGAGAAAAACGAACTGGGCATCTGGGTCAACACCGCCAATCAGCTGCTGGCCTCTATCGAAC GCCACACATACCTGCGCCACGAAGCCGAAAATAATCTACAGCGCATGGCGCAGTACGACTTTCTGACCGGCCTGCCCAACCGGCTGCAATTGCAGACCGG GCTGGACAGGATTCTGGAGAACGCCGGACGTCAGCAACACAGGGTCGCGATTCTTTGCGTGGGCCTGGACGACTTCAAGGGCATCAACGAGCAGTTCAGC TACCAGGCTGGCGACCAACTGCTGCTTGCACTGGCAGACCGGCTGCGCGCTCACAGCGGGCGCCTCGGTGCCCTGGCGCGATTGGGTGGTGATCAGTTTG CATTGGTGCAGGCCAGCATCGAGCAGCCGTATGAGGCGGCCGAACTGGCGCAGAAAATCCTCGACGAGCTTGAAGCCCCGTTTTCTGTGGGCGATCAGCA GATCCGTCTGCGCGCGACCATCGGTATCACCCTGTTCCCCGAAGACGGCGATAGCACTGAAAAGCTGCTGCAGAAAGCCGAACAGACCATGACGCTGGCC AAAGCCCGCTCGCGCAACCGGTATCAGTTCTACATCGCCAGCGTCGACAGCGAAATGCGCCGCCGCCGTGAGCTTGAAAAAGACCTGCGCGAAGCCCTGC CGCGCAATCAGTTGTACCTGGTCTATCAGCCGCAAATCAGTTACCGCGATCATCACGTGGTGGGCGTTGAGGCATTGATACGCTGGCAGCATCCAGAGCA TGGCCTGGTGCCGCCAGACGTGTTCATCCCGCTGGCCGAGCAAAACGGCAGCATCATTGCCATCGGCGAATGGGTGCTTGATCAGGCCTGTCGCCAGTTG CGGGAATGGCTCGATCAGGGCTTCACCGACTTGCGCATGGCGGTCAACCTGTCGACAGTGCAACTGCACCATGCAGAGCTGCCGCGCGTGGTGAACAACC TGCTACAGATCTATCGCCTGCCGCCCCGCAGCCTGGAACTGGAAGTGACCGAAACCGGCCTTATGGAAGACATTAATACCGCCGCCCAACACCTGCTGAG CCTGCGGCGCTCCGGCGCATTGATCGCCATCGATGATTTCGGCACCGGCTATTCCTCGCTGAGCTACCTGAAAAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTTCAGGACCTGATTGACGACGACGATGACGCCACCATTGTGCGGGCAATCATCCAGTTGGGTAAAAGCCTGGGCATGCAAGTCATTG CCGAGGGCGTGGAAACGGTCGAGCAGGAAGCCTACGTTGTGGCCGAGGGCTGCCATGAAGGCCAGGGCTATCTGTACAGCAAGCCGCTGCCGGGCCGGGA ACTGCTGACGTATCTGAAGCAAGTCCGACAAAGCAACACGGCGAGTCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACACCCGGCGGGGCTCGTCTTTCAAGCCGTCTTGAAACCGACTGTTACACCTGCTGGATGCCTGATCGCGACGACAAAGGCGTTTTGCCTTTACATCGAA TGCAAATCTTTCGCATCATGTCGCAGATTTTATGGGCGCACACCGCCATCACCTTTATTGATGCAGGATTCCGTCATGATTCGTATGCCTCTGGCAACCG CTAGTCTGTTGGCCATCGCTATCTCTCTCGCCGGTTGCGGCGAAGGCAAGGACAAGGCTGCCGCGCCAGCACCTGCTGCTGCCCCGGCCGCTCCTGCTGC GGCGCCTGCGGCACCCGCTCCGGCCCCGGCCGCTGCTGCCCAGACCGACGACGCGGCTGCCAAGGCTGTCGTCGCCAACTACGCCAACATGGTGTCGGCG GTATTCGACGATGCCCAAGGCGCTGCGAAAAAACTGAGCACTGCCGTCGACGCGTTTCTGGCCAAGCCCAATGACGAAACCCTGAAAGCTGCTCGTGATG
|
|
| Amino Acid Sequence |
>GGDEF domain/EAL domain protein
MKLELKNSLSVKLLRVVLLSALLVGVVLSCAQIVFDAYKTRHAVETDAERILGMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETLLAEK DRPLKASSSRWLTDLILGQERSFTTQLVGRSPYSEYYGDLRITLDTANYGEGFLVNAGIIFIAGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLIAINPD RPSEHQLPLLKGHEKNELGIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQHRVAILCVGLDDFKGINEQFS YQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDELEAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHHVVGVEALIRWQHPEHGLVPPDVFIPLAEQNGSIIAIGEWVLDQACRQL REWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQGYLYSKPLPGRELLTYLKQVRQSNTASL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|